HL_7O7Z_094

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7O7Z|1|B5|A|3608, 7O7Z|1|B5|A|3609, 7O7Z|1|B5|C|3610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_094 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.069

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7O7Z|1|B5|G|3605
7O7Z|1|B5|G|3606
7O7Z|1|B5|G|3607
7O7Z|1|B5|A|3608
7O7Z|1|B5|A|3609
7O7Z|1|B5|C|3610
7O7Z|1|B5|G|3611
7O7Z|1|B5|G|3612
7O7Z|1|B5|G|3613
7O7Z|1|B5|C|3614

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BO

Ribosomal protein uL13

Chain Be

eL32