HL_7O7Z_100

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUCAG(OMU)ACG

Length

9 nucleotides

Bulged bases

7O7Z|1|B5|A|4050

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_100 not in the Motif Atlas

Homologous match to HL_8C3A_059

Geometric discrepancy: 0.1737

The information below is about HL_8C3A_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34636.1

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7O7Z|1|B5|U|4047
7O7Z|1|B5|U|4048
7O7Z|1|B5|C|4049
7O7Z|1|B5|A|4050
7O7Z|1|B5|G|4051
7O7Z|1|B5|OMU|4052
7O7Z|1|B5|A|4053
7O7Z|1|B5|C|4054
7O7Z|1|B5|G|4055

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BQ

Ribosomal Protein eL18

Chain BT

eL21

Chain Ba

60S ribosomal protein L27a

Chain Bo

eL42