HL_7O7Z_103

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGU(PSU)CA(PSU)AG

Length

9 nucleotides

Bulged bases

7O7Z|1|B5|U|4165, 7O7Z|1|B5|A|4168

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_103 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.39

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7O7Z|1|B5|C|4163
7O7Z|1|B5|G|4164
7O7Z|1|B5|U|4165
7O7Z|1|B5|PSU|4166
7O7Z|1|B5|C|4167
7O7Z|1|B5|A|4168
7O7Z|1|B5|PSU|4169
7O7Z|1|B5|A|4170
7O7Z|1|B5|G|4171

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BI

60S ribosomal protein L10

Chain Bm

60S ribosomal protein L40