HL_7O7Z_104

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

7O7Z|1|B5|G|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O7Z_104 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.0635

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7O7Z|1|B5|A|4220
7O7Z|1|B5|G|4221
7O7Z|1|B5|C|4222
7O7Z|1|B5|A|4223
7O7Z|1|B5|G|4224
7O7Z|1|B5|A|4225
7O7Z|1|B5|A|4226
7O7Z|1|B5|U|4227

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BH

60S ribosomal protein L9

Chain Bm

60S ribosomal protein L40