3D structure

PDB id
7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
AUUGCAAUUAU(PSU)
Length
12 nucleotides
Bulged bases
7O7Z|1|A2|U|1622, 7O7Z|1|A2|U|1623, 7O7Z|1|A2|A|1624
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7O7Z_121 not in the Motif Atlas
Homologous match to HL_8C3A_224
Geometric discrepancy: 0.2235
The information below is about HL_8C3A_224
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_03273.2
Basepair signature
cWW-F-F-tWH-F-F-F
Number of instances in this motif group
3

Unit IDs

7O7Z|1|A2|A|1615
7O7Z|1|A2|U|1616
7O7Z|1|A2|U|1617
7O7Z|1|A2|G|1618
7O7Z|1|A2|C|1619
7O7Z|1|A2|A|1620
7O7Z|1|A2|A|1621
7O7Z|1|A2|U|1622
7O7Z|1|A2|U|1623
7O7Z|1|A2|A|1624
7O7Z|1|A2|U|1625
7O7Z|1|A2|PSU|1626

Current chains

Chain A2
18S rRNA

Nearby chains

Chain AG
uS14
Chain Ao
40S ribosomal protein uS19
Chain Ar
40S ribosomal protein S18
Chain As
Ribosomal protein eS19

Coloring options:


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