HL_7O7Z_129
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AUCUCGUCUGAUCU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O7Z_129 not in the Motif Atlas
- Homologous match to HL_8C3A_228
- Geometric discrepancy: 0.1376
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
7O7Z|1|B7|A|32
7O7Z|1|B7|U|33
7O7Z|1|B7|C|34
7O7Z|1|B7|U|35
7O7Z|1|B7|C|36
7O7Z|1|B7|G|37
7O7Z|1|B7|U|38
7O7Z|1|B7|C|39
7O7Z|1|B7|U|40
7O7Z|1|B7|G|41
7O7Z|1|B7|A|42
7O7Z|1|B7|U|43
7O7Z|1|B7|C|44
7O7Z|1|B7|U|45
Current chains
- Chain B7
- 5S
Nearby chains
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BD
- Ribosomal_L18_c domain-containing protein
- Chain BJ
- Ribosomal protein L11
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