HL_7O80_007

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O80|1|A2|G|378
7O80|1|A2|U|379
7O80|1|A2|C|380
7O80|1|A2|G|381
7O80|1|A2|C|382
7O80|1|A2|C|383
7O80|1|A2|G|384
7O80|1|A2|U|385
7O80|1|A2|G|386
7O80|1|A2|C|387
7O80|1|A2|C|388

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ah

40S ribosomal protein S8

Chain Ak

40S ribosomal protein S11