7O80 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7O80_001 | 1/A2/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_7O80_002 | 1/A2/69:80 | No text annotation | geometric HL_361D_002 NA | |
| HL_7O80_003 | 1/A2/156:162 | GNRA related | homologous HL_4V88_188 NA | |
| HL_7O80_005 | 1/A2/289:296 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
| HL_7O80_007 | 1/A2/378:388 | No text annotation | ||
| HL_7O80_008 | 1/A2/417:422 | No text annotation | homologous HL_4V88_194 NA | |
| HL_7O80_009 | 1/A2/442:453 | No text annotation | homologous HL_4V88_195 NA | |
| HL_7O80_119 | 1/A2/463:468 | UNCG | homologous HL_8P9A_200 HL_61337.3 | |
| HL_7O80_011 | 1/A2/499:505 | No text annotation | homologous HL_4V88_197 NA | |
| HL_7O80_013 | 1/A2/570:582 | No text annotation | geometric HL_4V88_199 NA | |
| HL_7O80_014 | 1/A2/619:624 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_7O80_015 | 1/A2/821:829 | No text annotation | homologous HL_4V88_203 NA | |
| HL_7O80_016 | 1/A2/835:839 | Mini UNCG | geometric HL_4YAZ_004 HL_90436.3 | |
| HL_7O80_120 | 1/A2/958:967 | No text annotation | homologous HL_8C3A_211 NA | |
| HL_7O80_019 | 1/A2/995:1000 | GNRA | homologous HL_4V88_207 NA | |
| HL_7O80_020 | 1/A2/1055:1065 | No text annotation | homologous HL_4V88_208 NA | |
| HL_7O80_021 | 1/A2/1115:1120 | Externally structured | geometric HL_5TBW_022 NA | |
| HL_7O80_022 | 1/A2/1142:1147 | GNRA | homologous HL_4V88_210 NA | |
| HL_7O80_023 | 1/A2/1179:1184 | GNRA | homologous HL_4V88_211 NA | |
| HL_7O80_024 | 1/A2/1246:1255 | No text annotation | homologous HL_8C3A_217 NA | |
| HL_7O80_025 | 1/A2/1296:1305 | Anticodon loop related | homologous HL_4V88_213 NA | |
| HL_7O80_026 | 1/A2/1354:1359 | GNRA | homologous HL_4V88_214 NA | |
| HL_7O80_027 | 1/A2/1367:1374 | No text annotation | homologous HL_4V88_215 NA | |
| HL_7O80_028 | 1/A2/1418:1423 | Mini UNCG | geometric HL_1ZBH_001 HL_12626.2 | |
| HL_7O80_029 | 1/A2/1461:1467 | GNRA | homologous HL_4V88_217 NA | |
| HL_7O80_030 | 1/A2/1566:1571 | GNRA | homologous HL_4V88_218 NA | |
| HL_7O80_121 | 1/A2/1615:1626 | No text annotation | homologous HL_8C3A_224 NA | |
| HL_7O80_032 | 1/A2/1659:1667 | No text annotation | homologous HL_4V88_220 NA | |
| HL_7O80_034 | 1/A2/1848:1853 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_7O80_035 | 1/AT/12:23 | tRNA D-loop | homologous HL_5AH5_005 HL_18470.2 | |
| HL_7O80_036 | 1/AT/31:39 | tRNA anticodon loop | homologous HL_4TUE_034 NA | |
| HL_7O80_038 | 1/AT/63:71 | T-loop with 2 stacked bulged bases | homologous HL_5E81_213 NA | |
| HL_7O80_039 | 1/B5/37:44 | No text annotation | homologous HL_5TBW_001 NA | |
| HL_7O80_040 | 1/B5/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_7O80_041 | 1/B5/89:95 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_7O80_042 | 1/B5/131:137 | No text annotation | geometric HL_4WF9_003 HL_75660.7 | |
| HL_7O80_043 | 1/B5/204:211 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_7O80_044 | 1/B5/222:226 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_7O80_045 | 1/B5/230:238 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_7O80_046 | 1/B5/289:298 | No text annotation | homologous HL_5TBW_008 NA | |
| HL_7O80_047 | 1/B5/314:323 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_7O80_048 | 1/B5/368:373 | GNRA | homologous HL_8C3A_010 NA | |
| HL_7O80_122 | 1/B5/393:398 | GNRA | homologous HL_8C3A_011 NA | |
| HL_7O80_051 | 1/B5/862:870 | No text annotation | geometric HL_4FEN_001 HL_59138.2 | |
| HL_7O80_053 | 1/B5/1069:1074 | Mini UNCG | geometric HL_6AAX_001 HL_12626.2 | |
| HL_7O80_123 | 1/B5/1261:1270 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_7O80_129 | 1/B5/1308:1317 | No text annotation | ||
| HL_7O80_057 | 1/B5/1333:1338 | GNRA | homologous HL_8C3A_016 NA | |
| HL_7O80_058 | 1/B5/1392:1403 | Pseudoknot geometry | geometric HL_4QLM_002 HL_00911.2 | |
| HL_7O80_059 | 1/B5/1435:1439 | Mini UNCG | geometric HL_4V9F_041 HL_90436.3 | |
| HL_7O80_060 | 1/B5/1516:1521 | GNRA | homologous HL_8C3A_019 NA | |
| HL_7O80_061 | 1/B5/1548:1557 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_7O80_062 | 1/B5/1582:1590 | No text annotation | homologous HL_5TBW_021 NA | |
| HL_7O80_063 | 1/B5/1630:1635 | Externally structured | homologous HL_5TBW_022 NA | |
| HL_7O80_065 | 1/B5/1755:1762 | T-loop related | geometric HL_5J7L_024 NA | |
| HL_7O80_066 | 1/B5/1803:1809 | GNRA | homologous HL_8C3A_025 NA | |
| HL_7O80_067 | 1/B5/1825:1832 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_7O80_068 | 1/B5/1917:1927 | No text annotation | homologous HL_8C3A_027 NA | |
| HL_7O80_069 | 1/B5/1945:1952 | GNRA wlth tandem sheared | homologous HL_8C3A_028 NA | |
| HL_7O80_070 | 1/B5/2100:2104 | Mini UNCG | geometric HL_5U30_001 HL_90436.3 | |
| HL_7O80_071 | 1/B5/2160:2165 | GNRA | homologous HL_8C3A_030 NA | |
| HL_7O80_072 | 1/B5/2219:2227 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_7O80_073 | 1/B5/2263:2269 | Pseudoknot geometry with 3' bulge | homologous HL_5TBW_032 NA | |
| HL_7O80_074 | 1/B5/2301:2306 | GNRA variation | homologous HL_5TBW_033 NA | |
| HL_7O80_075 | 1/B5/2312:2314 | No text annotation | ||
| HL_7O80_077 | 1/B5/2366:2375 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_7O80_079 | 1/B5/2421:2426 | GNRA | homologous HL_8C3A_036 NA | |
| HL_7O80_124 | 1/B5/2467:2475 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_7O80_081 | 1/B5/2507:2513 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_7O80_082 | 1/B5/2548:2553 | No text annotation | geometric HL_2Y9H_003 HL_75660.7 | |
| HL_7O80_083 | 1/B5/2581:2585 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_7O80_084 | 1/B5/2635:2642 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_7O80_085 | 1/B5/2653:2659 | GNRA | homologous HL_5TBW_042 NA | |
| HL_7O80_086 | 1/B5/2715:2720 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_7O80_088 | 1/B5/3346:3350 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_7O80_125 | 1/B5/3371:3381 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_7O80_090 | 1/B5/3400:3406 | GNRA | homologous HL_8C3A_047 NA | |
| HL_7O80_126 | 1/B5/3456:3461 | GNRA | homologous HL_8P9A_159 HL_34789.4 | |
| HL_7O80_092 | 1/B5/3489:3499 | No text annotation | homologous HL_5TBW_049 NA | |
| HL_7O80_093 | 1/B5/3528:3536 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_7O80_094 | 1/B5/3605:3614 | No text annotation | homologous HL_5TBW_051 NA | |
| HL_7O80_096 | 1/B5/3939:3947 | No text annotation | homologous HL_5TBW_054 NA | |
| HL_7O80_097 | 1/B5/3956:3968 | No text annotation | homologous HL_8P9A_166 HL_02042.1 | |
| HL_7O80_098 | 1/B5/3996:4004 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_7O80_099 | 1/B5/4016:4023 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_7O80_100 | 1/B5/4047:4055 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_7O80_101 | 1/B5/4067:4072 | GNRA | homologous HL_8C3A_060 NA | |
| HL_7O80_102 | 1/B5/4098:4108 | Pseudoknot geometry | homologous HL_5TBW_060 NA | |
| HL_7O80_103 | 1/B5/4163:4171 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_7O80_104 | 1/B5/4220:4227 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_7O80_105 | 1/B5/4243:4249 | No text annotation | homologous HL_5TBW_063 NA | |
| HL_7O80_106 | 1/B5/4286:4291 | GNRA | homologous HL_5TBW_064 NA | |
| HL_7O80_107 | 1/B5/4349:4354 | GNRA | homologous HL_5TBW_065 NA | |
| HL_7O80_108 | 1/B5/4392:4397 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_7O80_109 | 1/B5/4434:4448 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_7O80_110 | 1/B5/4645:4654 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_7O80_111 | 1/B5/4714:4722 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_7O80_127 | 1/B5/4760:4767 | No text annotation | ||
| HL_7O80_128 | 1/B7/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_7O80_113 | 1/B7/36:41 | No text annotation | homologous HL_5TBW_185 NA | |
| HL_7O80_114 | 1/B7/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_7O80_115 | 1/B8/47:56 | Pseudoknot with intercalation | geometric HL_4V9F_001 HL_17803.1 | |
| HL_7O80_116 | 1/B8/68:90 | No text annotation | homologous HL_8C3A_075 NA | |
| HL_7O80_117 | 1/B8/107:112 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_7O80_118 | 1/B8/122:128 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7O80_004 | GNRA related | ||
| HL_7O80_006 | No text annotation | ||
| HL_7O80_010 | No text annotation | ||
| HL_7O80_012 | No text annotation | ||
| HL_7O80_017 | Pseudoknot geometry | ||
| HL_7O80_018 | No text annotation | ||
| HL_7O80_031 | No text annotation | ||
| HL_7O80_033 | No text annotation | ||
| HL_7O80_037 | No text annotation | ||
| HL_7O80_049 | No text annotation | ||
| HL_7O80_050 | UNCG | ||
| HL_7O80_052 | No text annotation | ||
| HL_7O80_054 | No text annotation | ||
| HL_7O80_055 | No text annotation | ||
| HL_7O80_056 | No text annotation | ||
| HL_7O80_064 | No text annotation | ||
| HL_7O80_076 | No text annotation | ||
| HL_7O80_078 | GNRA | ||
| HL_7O80_080 | No text annotation | ||
| HL_7O80_087 | No text annotation | ||
| HL_7O80_089 | No text annotation | ||
| HL_7O80_091 | No text annotation | ||
| HL_7O80_095 | No text annotation | ||
| HL_7O80_112 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7O80_294 | 1/A2/23:25, 1/A2/650:652 | Isolated non-canonical cWW pair | geometric IL_7A0S_107 IL_71625.3 | |
| IL_7O80_295 | 1/A2/34:36, 1/A2/520:522 | Isolated non-canonical cWW pair | homologous IL_8C3A_393 NA | |
| IL_7O80_003 | 1/A2/37:40, 1/A2/515:519 | Double sheared | geometric IL_4WF9_016 IL_58355.2 | |
| IL_7O80_004 | 1/A2/41:47, 1/A2/480:482 | No text annotation | geometric IL_4V88_387 NA | |
| IL_7O80_005 | 1/A2/49:51, 1/A2/477:478 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_7O80_006 | 1/A2/57:62, 1/A2/86:88 | No text annotation | homologous IL_4V88_389 NA | |
| IL_7O80_007 | 1/A2/63:68, 1/A2/81:85 | No text annotation | homologous IL_4V88_390 NA | |
| IL_7O80_009 | 1/A2/108:110, 1/A2/352:354 | Stack and bulge | geometric IL_2O3X_001 IL_53541.1 | |
| IL_7O80_010 | 1/A2/110:112, 1/A2/350:352 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_01003.3 | |
| IL_7O80_011 | 1/A2/112:115, 1/A2/349:350 | Multiple bulged bases | geometric IL_4V88_392 NA | |
| IL_7O80_296 | 1/A2/116:121, 1/A2/344:348 | No text annotation | homologous IL_8P9A_382 IL_31545.1 | |
| IL_7O80_297 | 1/A2/145:151, 1/A2/167:174 | No text annotation | homologous IL_8C3A_402 NA | |
| IL_7O80_298 | 1/A2/152:154, 1/A2/164:166 | No text annotation | homologous IL_8P9A_384 IL_87720.1 | |
| IL_7O80_016 | 1/A2/188:192, 1/A2/207:211 | Double sheared with near cWW | geometric IL_7A0S_056 IL_87767.2 | |
| IL_7O80_017 | 1/A2/216:219, 1/A2/303:310 | No text annotation | ||
| IL_7O80_018 | 1/A2/313:315, 1/A2/337:338 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_7O80_299 | 1/A2/318:320, 1/A2/333:334 | Single stack bend | geometric IL_5TBW_009 NA | |
| IL_7O80_020 | 1/A2/360:365, 1/A2/397:404 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_7O80_021 | 1/A2/367:372, 1/A2/394:395 | No text annotation | geometric IL_5Y58_001 IL_37738.1 | |
| IL_7O80_022 | 1/A2/412:414, 1/A2/425:430 | No text annotation | homologous IL_4V88_404 NA | |
| IL_7O80_023 | 1/A2/438:440, 1/A2/455:457 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_7O80_300 | 1/A2/460:462, 1/A2/469:471 | Isolated non-canonical cWW pair | homologous IL_8C3A_414 NA | |
| IL_7O80_301 | 1/A2/488:490, 1/A2/512:513 | Single bulged U | geometric IL_4V88_407 NA | |
| IL_7O80_357 | 1/A2/492:496, 1/A2/509:510 | C-loop | homologous IL_8P9A_397 IL_26900.1 | |
| IL_7O80_358 | 1/A2/496:497, 1/A2/507:509 | No text annotation | homologous IL_8CRE_415 IL_28408.2 | |
| IL_7O80_025 | 1/A2/530:531, 1/A2/555:557 | Single bulged A | homologous IL_4V88_409 NA | |
| IL_7O80_026 | 1/A2/536:538, 1/A2/547:550 | Isolated non-canonical cWW pair | geometric IL_5TBW_068 NA | |
| IL_7O80_027 | 1/A2/564:566, 1/A2/586:593 | No text annotation | homologous IL_8C3A_420 NA | |
| IL_7O80_028 | 1/A2/567:570, 1/A2/582:585 | Tandem non-canonical cWW pairs | geometric IL_5C5W_003 NA | |
| IL_7O80_029 | 1/A2/600:607, 1/A2/637:638 | SSU/LSU pseudoknot | homologous IL_4V88_413 NA | |
| IL_7O80_030 | 1/A2/607:609, 1/A2/636:637 | Single bulged U | geometric IL_7RQB_038 NA | |
| IL_7O80_032 | 1/A2/612:618, 1/A2/625:633 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_7O80_033 | 1/A2/664:666, 1/A2/1163:1165 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_01003.3 | |
| IL_7O80_034 | 1/A2/666:672, 1/A2/1162:1163 | No text annotation | homologous IL_4V88_416 NA | |
| IL_7O80_035 | 1/A2/674:676, 1/A2/1031:1033 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_7O80_036 | 1/A2/677:681, 1/A2/1026:1030 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_7O80_303 | 1/A2/803:804, 1/A2/861:864 | No text annotation | homologous IL_8P9A_412 IL_73108.2 | |
| IL_7O80_042 | 1/A2/806:808, 1/A2/857:859 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_7O80_304 | 1/A2/808:816, 1/A2/850:857 | No text annotation | homologous IL_8C3A_503 NA | |
| IL_7O80_044 | 1/A2/834:835, 1/A2/839:842 | Multiple bulged bases | geometric IL_4V9F_088 IL_44609.2 | |
| IL_7O80_045 | 1/A2/875:877, 1/A2/911:913 | Isolated non-canonical cWW pair | geometric IL_6OL3_002 IL_01003.3 | |
| IL_7O80_046 | 1/A2/878:880, 1/A2/908:910 | Isolated non-canonical cWW pair | geometric IL_4LFB_006 IL_01003.3 | |
| IL_7O80_047 | 1/A2/923:924, 1/A2/1020:1023 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_7O80_305 | 1/A2/926:927, 1/A2/1016:1018 | Single bulged U | geometric IL_6UFH_004 IL_97561.3 | |
| IL_7O80_049 | 1/A2/929:932, 1/A2/1011:1014 | Tandem non-canonical cWW pairs | homologous IL_4V88_430 NA | |
| IL_7O80_050 | 1/A2/932:936, 1/A2/1008:1011 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_7O80_051 | 1/A2/943:946, 1/A2/982:985 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_7O80_052 | 1/A2/953:957, 1/A2/968:975 | Kink-turn | homologous IL_4V88_434 NA | |
| IL_7O80_053 | 1/A2/1043:1048, 1/A2/1072:1074 | Other IL | geometric IL_4V88_435 NA | |
| IL_7O80_054 | 1/A2/1048:1052, 1/A2/1068:1072 | tSH-tHW-tHS | homologous IL_4V88_436 NA | |
| IL_7O80_306 | 1/A2/1092:1094, 1/A2/1153:1159 | No text annotation | homologous IL_8P9A_425 IL_82706.2 | |
| IL_7O80_056 | 1/A2/1099:1102, 1/A2/1132:1135 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
| IL_7O80_307 | 1/A2/1099:1104, 1/A2/1130:1135 | No text annotation | geometric IL_6O5F_001 NA | |
| IL_7O80_057 | 1/A2/1102:1104, 1/A2/1130:1132 | Isolated non-canonical cWW pair | geometric IL_4V9F_105 IL_01003.3 | |
| IL_7O80_058 | 1/A2/1109:1111, 1/A2/1124:1125 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_7O80_059 | 1/A2/1169:1176, 1/A2/1187:1192 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_7O80_061 | 1/A2/1204:1205, 1/A2/1695:1697 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_7O80_308 | 1/A2/1207:1209, 1/A2/1692:1693 | Single bulged G | homologous IL_8C3A_448 NA | |
| IL_7O80_063 | 1/A2/1215:1218, 1/A2/1682:1686 | C-loop | homologous IL_4V88_443 NA | |
| IL_7O80_309 | 1/A2/1231:1233, 1/A2/1527:1529 | Isolated non-canonical cWW pair | homologous IL_8P9A_432 IL_01003.3 | |
| IL_7O80_066 | 1/A2/1236:1237, 1/A2/1522:1524 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_7O80_067 | 1/A2/1271:1273, 1/A2/1511:1513 | Isolated non-canonical cWW pair | geometric IL_5MWI_003 IL_01003.3 | |
| IL_7O80_068 | 1/A2/1282:1288, 1/A2/1315:1317 | No text annotation | ||
| IL_7O80_310 | 1/A2/1282:1291, 1/A2/1310:1317 | No text annotation | homologous IL_8P9A_470 IL_28304.1 | |
| IL_7O80_069 | 1/A2/1288:1291, 1/A2/1310:1315 | No text annotation | ||
| IL_7O80_070 | 1/A2/1291:1294, 1/A2/1307:1310 | Tandem non-canonical cWW pairs | geometric IL_3WBM_003 IL_15225.2 | |
| IL_7O80_311 | 1/A2/1326:1328, 1/A2/1503:1504 | Single bulged U | homologous IL_8C3A_455 NA | |
| IL_7O80_072 | 1/A2/1330:1334, 1/A2/1499:1501 | Isolated cWS basepair | geometric IL_4LFB_044 IL_82453.1 | |
| IL_7O80_312 | 1/A2/1330:1335, 1/A2/1497:1501 | No text annotation | geometric IL_6CZR_365 NA | |
| IL_7O80_313 | 1/A2/1334:1335, 1/A2/1497:1499 | No text annotation | geometric IL_8ZA0_002 IL_28408.2 | |
| IL_7O80_314 | 1/A2/1335:1336, 1/A2/1493:1497 | Minor groove platform | geometric IL_4LFB_045 IL_24264.1 | |
| IL_7O80_315 | 1/A2/1338:1339, 1/A2/1489:1491 | Single bulged A | homologous IL_8C3A_458 NA | |
| IL_7O80_316 | 1/A2/1348:1350, 1/A2/1381:1383 | Isolated cWH basepair | homologous IL_8P9A_442 IL_10892.2 | |
| IL_7O80_076 | 1/A2/1364:1366, 1/A2/1375:1376 | Minor groove platform | homologous IL_8C3A_460 NA | |
| IL_7O80_317 | 1/A2/1396:1400, 1/A2/1448:1451 | Tandem non-canonical cWW pairs | geometric IL_8P9A_419 IL_15225.2 | |
| IL_7O80_079 | 1/A2/1403:1406, 1/A2/1442:1445 | Minor groove platform | geometric IL_4V88_456 NA | |
| IL_7O80_080 | 1/A2/1409:1410, 1/A2/1433:1439 | Multiple bulged bases | geometric IL_1R3E_002 IL_05670.1 | |
| IL_7O80_081 | 1/A2/1413:1414, 1/A2/1428:1430 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_7O80_082 | 1/A2/1417:1418, 1/A2/1423:1425 | No text annotation | ||
| IL_7O80_083 | 1/A2/1538:1540, 1/A2/1595:1597 | Isolated non-canonical cWW pair | geometric IL_3SZX_002 IL_01003.3 | |
| IL_7O80_318 | 1/A2/1542:1551, 1/A2/1583:1593 | No text annotation | ||
| IL_7O80_084 | 1/A2/1551:1559, 1/A2/1578:1583 | 180 degree turn | geometric IL_4LFB_052 IL_08849.1 | |
| IL_7O80_085 | 1/A2/1561:1563, 1/A2/1574:1576 | Isolated non-canonical cWW pair | geometric IL_5AOX_001 IL_01003.3 | |
| IL_7O80_086 | 1/A2/1605:1611, 1/A2/1630:1636 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_7O80_087 | 1/A2/1701:1703, 1/A2/1834:1837 | No text annotation | homologous IL_4V88_463 NA | |
| IL_7O80_088 | 1/A2/1703:1706, 1/A2/1830:1834 | No text annotation | homologous IL_8P9A_453 IL_25873.2 | |
| IL_7O80_089 | 1/A2/1707:1709, 1/A2/1827:1829 | Isolated non-canonical cWW pair | geometric IL_5MWI_002 IL_01003.3 | |
| IL_7O80_090 | 1/A2/1709:1712, 1/A2/1823:1827 | Tandem non-canonical cWW pairs | geometric IL_3WBM_002 IL_15225.2 | |
| IL_7O80_091 | 1/A2/1715:1717, 1/A2/1818:1820 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_7O80_092 | 1/A2/1718:1721, 1/A2/1814:1817 | Double sheared | homologous IL_4V88_468 NA | |
| IL_7O80_093 | 1/A2/1721:1723, 1/A2/1813:1814 | Single bulged U | geometric IL_4V88_469 NA | |
| IL_7O80_094 | 1/A2/1730:1732, 1/A2/1804:1806 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_7O80_095 | 1/A2/1734:1737, 1/A2/1799:1802 | Double sheared | homologous IL_4V88_471 NA | |
| IL_7O80_096 | 1/A2/1740:1742, 1/A2/1794:1796 | Isolated non-canonical cWW pair | geometric IL_3GM7_006 IL_01003.3 | |
| IL_7O80_097 | 1/A2/1743:1747, 1/A2/1789:1793 | Triple sheared | homologous IL_4V88_474 NA | |
| IL_7O80_101 | 1/B5/6:7, 1/B8/149:151 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_7O80_102 | 1/B5/12:14, 1/B8/143:144 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_7O80_103 | 1/B5/16:18, 1/B8/139:141 | Isolated cWH basepair | geometric IL_4J50_001 IL_10892.2 | |
| IL_7O80_104 | 1/B5/26:27, 1/B5/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_7O80_105 | 1/B5/30:37, 1/B5/44:52 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_93502.1 | |
| IL_7O80_106 | 1/B5/81:88, 1/B5/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_7O80_107 | 1/B5/118:121, 1/B5/152:153 | Stack outside cWW | geometric IL_5J7L_268 NA | |
| IL_7O80_320 | 1/B5/118:122, 1/B5/147:153 | No text annotation | ||
| IL_7O80_108 | 1/B5/121:122, 1/B5/147:152 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_7O80_109 | 1/B5/125:126, 1/B5/142:144 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_7O80_110 | 1/B5/168:173, 1/B5/263:267 | No text annotation | ||
| IL_7O80_322 | 1/B5/184:189, 1/B5/252:253 | No text annotation | ||
| IL_7O80_113 | 1/B5/195:196, 1/B5/244:246 | Single bulged C | geometric IL_7KGA_004 IL_05642.2 | |
| IL_7O80_114 | 1/B5/199:201, 1/B5/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_7O80_115 | 1/B5/339:342, 1/B8/32:33 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_7O80_116 | 1/B5/348:350, 1/B8/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_7O80_117 | 1/B5/387:390, 1/B5/401:414 | No text annotation | homologous IL_5TBW_014 NA | |
| IL_7O80_119 | 1/B5/415:421, 1/B8/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_7O80_120 | 1/B5/443:444, 1/B5/1246:1248 | Single bulged A | geometric IL_5TBW_013 NA | |
| IL_7O80_121 | 1/B5/444:446, 1/B5/1244:1246 | Isolated non-canonical cWW pair | geometric IL_5D0B_001 IL_68118.3 | |
| IL_7O80_122 | 1/B5/448:450, 1/B5/1241:1242 | Single bulged C | geometric IL_4C7O_003 IL_05642.2 | |
| IL_7O80_123 | 1/B5/459:460, 1/B5/689:691 | Single bulged C | geometric IL_1S03_006 IL_05642.2 | |
| IL_7O80_124 | 1/B5/462:464, 1/B5/685:687 | Isolated non-canonical cWW pair | geometric IL_3D0U_006 IL_01003.3 | |
| IL_7O80_125 | 1/B5/466:472, 1/B5/676:683 | No text annotation | ||
| IL_7O80_126 | 1/B5/481:483, 1/B5/666:667 | Single bulged U | geometric IL_2R8S_004 IL_97561.3 | |
| IL_7O80_127 | 1/B5/483:486, 1/B5/665:666 | Multiple bulged bases | geometric IL_6JXM_001 IL_05670.1 | |
| IL_7O80_128 | 1/B5/488:489, 1/B5/659:663 | Multiple bulged bases | geometric IL_1R3E_002 IL_05670.1 | |
| IL_7O80_129 | 1/B5/492:494, 1/B5/655:656 | Single bulged U | geometric IL_2ZY6_002 IL_97561.3 | |
| IL_7O80_130 | 1/B5/498:500, 1/B5/650:651 | No text annotation | ||
| IL_7O80_131 | 1/B5/501:506, 1/B5/648:649 | Multiple bulged bases | geometric IL_1R3E_002 IL_05670.1 | |
| IL_7O80_132 | 1/B5/510:512, 1/B5/643:644 | Single bulged A | geometric IL_6WPI_001 IL_14190.2 | |
| IL_7O80_135 | 1/B5/703:704, 1/B5/1230:1232 | Single bulged G | geometric IL_4LFB_036 IL_28408.2 | |
| IL_7O80_136 | 1/B5/717:718, 1/B5/842:845 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_7O80_137 | 1/B5/721:725, 1/B5/838:839 | No text annotation | ||
| IL_7O80_138 | 1/B5/726:729, 1/B5/827:837 | No text annotation | ||
| IL_7O80_139 | 1/B5/731:734, 1/B5/822:825 | No text annotation | geometric IL_5J7L_341 NA | |
| IL_7O80_140 | 1/B5/740:747, 1/B5/808:816 | No text annotation | geometric IL_8C3A_022 NA | |
| IL_7O80_143 | 1/B5/988:989, 1/B5/1123:1125 | Single bulged A | geometric IL_2VPL_002 IL_14190.2 | |
| IL_7O80_145 | 1/B5/997:999, 1/B5/1104:1108 | Isolated cWS basepair | geometric IL_4TS2_003 NA | |
| IL_7O80_146 | 1/B5/1001:1002, 1/B5/1100:1102 | Single bulged C | geometric IL_3W3S_001 IL_05642.2 | |
| IL_7O80_147 | 1/B5/1007:1009, 1/B5/1093:1095 | Isolated non-canonical cWW pair | geometric IL_4LFB_061 NA | |
| IL_7O80_149 | 1/B5/1064:1066, 1/B5/1077:1079 | Isolated cWH basepair | geometric IL_3W3S_003 IL_10892.2 | |
| IL_7O80_325 | 1/B5/1131:1133, 1/B5/1207:1208 | No text annotation | ||
| IL_7O80_151 | 1/B5/1301:1304, 1/B5/1323:1326 | No text annotation | ||
| IL_7O80_326 | 1/B5/1301:1305, 1/B5/1320:1326 | No text annotation | ||
| IL_7O80_152 | 1/B5/1304:1305, 1/B5/1320:1323 | Major groove intercalation | geometric IL_1NBS_009 IL_71421.2 | |
| IL_7O80_153 | 1/B5/1380:1384, 1/B5/1410:1415 | Triple sheared related | geometric IL_4V9F_018 IL_67427.1 | |
| IL_7O80_154 | 1/B5/1386:1389, 1/B5/1405:1408 | Double sheared | geometric IL_4LFB_060 IL_58355.2 | |
| IL_7O80_155 | 1/B5/1390:1392, 1/B5/1403:1404 | Single bulged C | geometric IL_1S03_006 IL_05642.2 | |
| IL_7O80_156 | 1/B5/1422:1423, 1/B5/1451:1453 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_7O80_157 | 1/B5/1429:1431, 1/B5/1444:1445 | Single stack bend | geometric IL_5J7L_249 NA | |
| IL_7O80_158 | 1/B5/1434:1435, 1/B5/1439:1441 | No text annotation | ||
| IL_7O80_327 | 1/B5/1475:1477, 1/B5/1610:1612 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_7O80_328 | 1/B5/1477:1481, 1/B5/1603:1610 | No text annotation | homologous IL_8P9A_256 IL_73855.1 | |
| IL_7O80_160 | 1/B5/1500:1501, 1/B5/1567:1569 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_7O80_161 | 1/B5/1505:1506, 1/B5/1531:1533 | Single bulged G | geometric IL_4V9F_026 IL_28408.2 | |
| IL_7O80_162 | 1/B5/1506:1510, 1/B5/1527:1531 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_7O80_163 | 1/B5/1541:1544, 1/B5/1560:1562 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_7O80_164 | 1/B5/1545:1547, 1/B5/1558:1559 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_7O80_165 | 1/B5/1579:1581, 1/B5/1591:1595 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
| IL_7O80_166 | 1/B5/1626:1628, 1/B5/1637:1639 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_7O80_167 | 1/B5/1641:1643, 1/B5/1787:1790 | No text annotation | ||
| IL_7O80_168 | 1/B5/1649:1660, 1/B5/1780:1781 | No text annotation | ||
| IL_7O80_169 | 1/B5/1662:1664, 1/B5/1777:1778 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_7O80_329 | 1/B5/1671:1676, 1/B5/1731:1736 | No text annotation | ||
| IL_7O80_330 | 1/B5/1676:1677, 1/B5/1729:1731 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_7O80_331 | 1/B5/1678:1683, 1/B5/1725:1728 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_7O80_360 | 1/B5/1685:1688, 1/B5/1720:1723 | Tandem non-canonical cWW pairs | homologous IL_8P9A_269 IL_71194.2 | |
| IL_7O80_333 | 1/B5/1688:1690, 1/B5/1718:1720 | Isolated non-canonical cWW pair | homologous IL_8C3A_045 NA | |
| IL_7O80_361 | 1/B5/1692:1695, 1/B5/1715:1716 | Major groove minor groove platform; mini C-loop | geometric IL_4LFB_025 IL_73108.2 | |
| IL_7O80_175 | 1/B5/1753:1755, 1/B5/1762:1763 | Single bulged A | homologous IL_5TBW_045 NA | |
| IL_7O80_334 | 1/B5/1797:1799, 1/B5/1813:1815 | Isolated non-canonical cWW pair | homologous IL_8P9A_274 IL_01003.3 | |
| IL_7O80_177 | 1/B5/1844:1848, 1/B5/2006:2010 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_7O80_178 | 1/B5/1850:1857, 1/B5/2003:2004 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_7O80_179 | 1/B5/1857:1859, 1/B5/2002:2003 | No text annotation | ||
| IL_7O80_180 | 1/B5/1859:1861, 1/B5/2001:2002 | No text annotation | ||
| IL_7O80_181 | 1/B5/1865:1872, 1/B5/1992:1997 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_7O80_182 | 1/B5/1872:1883, 1/B5/1977:1992 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_7O80_183 | 1/B5/1885:1887, 1/B5/1974:1975 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_7O80_184 | 1/B5/1896:1904, 1/B5/1961:1965 | Kink-turn | homologous IL_5TBW_054 NA | |
| IL_7O80_185 | 1/B5/1912:1916, 1/B5/1928:1932 | No text annotation | homologous IL_8C3A_058 NA | |
| IL_7O80_336 | 1/B5/1940:1944, 1/B5/1953:1955 | Major groove platform with extra cWW | geometric IL_1MMS_002 NA | |
| IL_7O80_186 | 1/B5/2022:2024, 1/B5/2115:2116 | Single bulged U | geometric IL_6CZR_156 NA | |
| IL_7O80_187 | 1/B5/2133:2135, 1/B5/2185:2188 | Isolated cWS basepair | homologous IL_5TBW_057 NA | |
| IL_7O80_188 | 1/B5/2142:2144, 1/B5/2177:2178 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_7O80_189 | 1/B5/2145:2152, 1/B5/2172:2176 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_7O80_190 | 1/B5/2155:2157, 1/B5/2168:2169 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_7O80_337 | 1/B5/2201:2207, 1/B5/3590:3595 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_7O80_191 | 1/B5/2249:2252, 1/B5/2626:2627 | Major groove platform; stack outside cWW | geometric IL_4V9F_050 IL_74641.2 | |
| IL_7O80_338 | 1/B5/2258:2262, 1/B5/2270:2272 | C-loop | homologous IL_8C3A_482 NA | |
| IL_7O80_193 | 1/B5/2289:2293, 1/B5/2352:2357 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_7O80_194 | 1/B5/2320:2322, 1/B5/2342:2343 | Minor groove platform | geometric IL_1U6B_007 IL_34520.3 | |
| IL_7O80_195 | 1/B5/2385:2390, 1/B5/2615:2617 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_7O80_196 | 1/B5/2392:2393, 1/B5/2611:2613 | Single bulged U | geometric IL_2A64_002 IL_97561.3 | |
| IL_7O80_197 | 1/B5/2432:2436, 1/B5/2595:2599 | Triple sheared | geometric IL_7RQB_075 NA | |
| IL_7O80_198 | 1/B5/2456:2457, 1/B5/2567:2569 | Single bulged A | geometric IL_3MJA_001 NA | |
| IL_7O80_199 | 1/B5/2457:2458, 1/B5/2565:2567 | Single stack bend | homologous IL_5TBW_070 NA | |
| IL_7O80_200 | 1/B5/2489:2491, 1/B5/2528:2531 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_87316.2 | |
| IL_7O80_201 | 1/B5/2494:2496, 1/B5/2524:2525 | Single bulged G | geometric IL_3NDB_004 NA | |
| IL_7O80_202 | 1/B5/2499:2505, 1/B5/2515:2521 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_7O80_203 | 1/B5/2547:2548, 1/B5/2553:2555 | No text annotation | ||
| IL_7O80_339 | 1/B5/2675:2681, 1/B5/3582:3585 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_7O80_340 | 1/B5/2687:2689, 1/B5/3574:3576 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_7O80_341 | 1/B5/2690:2693, 1/B5/3572:3573 | Major groove platform; stack outside cWW | geometric IL_8C3A_082 NA | |
| IL_7O80_342 | 1/B5/2690:2698, 1/B5/3569:3573 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_7O80_207 | 1/B5/2693:2698, 1/B5/3569:3572 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_7O80_208 | 1/B5/2710:2715, 1/B5/2720:2726 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_7O80_209 | 1/B5/2732:2734, 1/B5/3342:3344 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_7O80_210 | 1/B5/2739:2740, 1/B5/3334:3337 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_7O80_213 | 1/B5/3364:3365, 1/B5/3559:3561 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_7O80_214 | 1/B5/3392:3397, 1/B5/3409:3416 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_7O80_216 | 1/B5/3432:3435, 1/B5/3481:3482 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_7O80_217 | 1/B5/3436:3437, 1/B5/3477:3480 | Major groove intercalation | geometric IL_5J7L_315 NA | |
| IL_7O80_219 | 1/B5/3440:3442, 1/B5/3473:3474 | Single stack bend | geometric IL_7A0S_054 IL_15011.2 | |
| IL_7O80_220 | 1/B5/3442:3446, 1/B5/3471:3473 | Minor groove platform with extra cWW | geometric IL_4WF9_003 IL_82096.1 | |
| IL_7O80_343 | 1/B5/3447:3453, 1/B5/3464:3470 | No text annotation | homologous IL_8P9A_316 IL_65359.1 | |
| IL_7O80_224 | 1/B5/3512:3513, 1/B5/3543:3546 | Bulged stacked bases | homologous IL_5TBW_089 NA | |
| IL_7O80_344 | 1/B5/3513:3524, 1/B5/3540:3543 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_7O80_227 | 1/B5/3627:3630, 1/B5/4309:4311 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_7O80_229 | 1/B5/3632:3634, 1/B5/4304:4307 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_7O80_230 | 1/B5/3645:3647, 1/B5/4134:4135 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_7O80_231 | 1/B5/3648:3649, 1/B5/4130:4133 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_7O80_233 | 1/B5/3659:3661, 1/B5/3927:3930 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_7O80_238 | 1/B5/3810:3816, 1/B5/3907:3910 | No text annotation | homologous IL_5TBW_096 NA | |
| IL_7O80_239 | 1/B5/3823:3825, 1/B5/3840:3841 | Single bulged C | geometric IL_6XKO_001 IL_05642.2 | |
| IL_7O80_240 | 1/B5/3861:3863, 1/B5/3895:3897 | Isolated cWH basepair | geometric IL_3R1D_002 IL_10892.2 | |
| IL_7O80_242 | 1/B5/3937:3938, 1/B5/3948:3950 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_7O80_243 | 1/B5/3989:3991, 1/B5/4009:4013 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_7O80_347 | 1/B5/4037:4039, 1/B5/4063:4064 | No text annotation | ||
| IL_7O80_348 | 1/B5/4041:4044, 1/B5/4058:4061 | Tandem non-canonical cWW pairs | homologous IL_8C3A_109 NA | |
| IL_7O80_246 | 1/B5/4093:4096, 1/B5/4110:4111 | Single stack bend | geometric IL_7RQB_058 NA | |
| IL_7O80_349 | 1/B5/4146:4149, 1/B5/4186:4190 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_7O80_350 | 1/B5/4149:4151, 1/B5/4185:4186 | No text annotation | homologous IL_8P9A_331 IL_46637.2 | |
| IL_7O80_248 | 1/B5/4151:4153, 1/B5/4181:4185 | Major groove minor groove platform with extra cWW | geometric IL_5TBW_105 NA | |
| IL_7O80_250 | 1/B5/4158:4162, 1/B5/4172:4176 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_7O80_251 | 1/B5/4199:4200, 1/B5/4272:4274 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_7O80_351 | 1/B5/4202:4204, 1/B5/4266:4270 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_7O80_253 | 1/B5/4204:4205, 1/B5/4263:4266 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_7O80_254 | 1/B5/4212:4214, 1/B5/4235:4237 | Isolated non-canonical cWW pair | homologous IL_8C3A_118 NA | |
| IL_7O80_352 | 1/B5/4212:4216, 1/B5/4231:4237 | No text annotation | ||
| IL_7O80_255 | 1/B5/4214:4216, 1/B5/4231:4235 | No text annotation | geometric IL_3DD2_004 IL_09353.1 | |
| IL_7O80_258 | 1/B5/4241:4243, 1/B5/4249:4251 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_7O80_260 | 1/B5/4283:4284, 1/B5/4293:4295 | Single bulged A | geometric IL_5TBW_113 NA | |
| IL_7O80_263 | 1/B5/4326:4328, 1/B5/4467:4469 | No text annotation | geometric IL_3ICQ_003 NA | |
| IL_7O80_264 | 1/B5/4328:4331, 1/B5/4463:4467 | Double sheared | geometric IL_7A0S_081 IL_58355.2 | |
| IL_7O80_353 | 1/B5/4336:4338, 1/B5/4364:4366 | Isolated non-canonical cWW pair | homologous IL_8P9A_343 IL_71625.3 | |
| IL_7O80_265 | 1/B5/4342:4349, 1/B5/4354:4360 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_7O80_354 | 1/B5/4370:4375, 1/B5/4415:4419 | No text annotation | ||
| IL_7O80_355 | 1/B5/4378:4383, 1/B5/4408:4412 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_7O80_268 | 1/B5/4384:4386, 1/B5/4405:4407 | Isolated non-canonical cWW pair | geometric IL_1YZ9_001 NA | |
| IL_7O80_269 | 1/B5/4387:4388, 1/B5/4401:4404 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_7O80_270 | 1/B5/4426:4431, 1/B5/4451:4456 | UAA/GAN with extra cWW | geometric IL_5J7L_350 NA | |
| IL_7O80_272 | 1/B5/4490:4493, 1/B5/4693:4696 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
| IL_7O80_273 | 1/B5/4496:4498, 1/B5/4687:4690 | No text annotation | ||
| IL_7O80_274 | 1/B5/4503:4513, 1/B5/4607:4616 | No text annotation | homologous IL_8P9A_352 IL_28855.1 | |
| IL_7O80_275 | 1/B5/4516:4519, 1/B5/4602:4604 | Major groove platform with extra cWW | geometric IL_3PDR_004 IL_36931.2 | |
| IL_7O80_276 | 1/B5/4624:4627, 1/B5/4670:4673 | Tandem non-canonical cWW pairs | geometric IL_4K27_003 IL_71194.2 | |
| IL_7O80_277 | 1/B5/4630:4635, 1/B5/4663:4667 | No text annotation | ||
| IL_7O80_356 | 1/B5/4711:4714, 1/B5/4722:4725 | Tandem non-canonical cWW pairs | geometric IL_3TZR_003 IL_71194.2 | |
| IL_7O80_279 | 1/B5/4731:4733, 1/B5/4796:4798 | Isolated non-canonical cWW pair | geometric IL_3HHN_004 IL_01003.3 | |
| IL_7O80_280 | 1/B5/4735:4736, 1/B5/4792:4794 | Single bulged C | geometric IL_1KUQ_002 IL_05642.2 | |
| IL_7O80_281 | 1/B5/4739:4741, 1/B5/4784:4789 | Isolated non-canonical cWW pair | homologous IL_5TBW_132 NA | |
| IL_7O80_282 | 1/B5/4742:4748, 1/B5/4778:4783 | No text annotation | ||
| IL_7O80_284 | 1/B5/4751:4753, 1/B5/4774:4775 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_7O80_285 | 1/B5/4753:4756, 1/B5/4771:4774 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_7O80_286 | 1/B7/15:16, 1/B7/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_7O80_287 | 1/B7/21:27, 1/B7/52:57 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_7O80_362 | 1/B7/28:29, 1/B7/48:51 | No text annotation | homologous IL_9DFE_112 IL_73108.2 | |
| IL_7O80_289 | 1/B7/32:36, 1/B7/41:45 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_7O80_290 | 1/B7/71:78, 1/B7/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_7O80_291 | 1/B7/79:81, 1/B7/95:97 | Isolated non-canonical cWW pair | geometric IL_4V88_470 NA | |
| IL_7O80_292 | 1/B7/82:85, 1/B7/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_7O80_293 | 1/B8/64:66, 1/B8/92:95 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7O80_001 | Partly complementary | ||
| IL_7O80_002 | Isolated non-canonical cWW pair | ||
| IL_7O80_008 | Isolated non-canonical cWW pair | ||
| IL_7O80_012 | No text annotation | ||
| IL_7O80_013 | No text annotation | ||
| IL_7O80_014 | No text annotation | ||
| IL_7O80_015 | Tandem non-canonical cWW pairs | ||
| IL_7O80_019 | No text annotation | ||
| IL_7O80_024 | No text annotation | ||
| IL_7O80_302 | C-loop with extra cWW pair | ||
| IL_7O80_031 | Not an internal loop | ||
| IL_7O80_037 | Stack and bulge | ||
| IL_7O80_038 | Isolated non-canonical cWW pair | ||
| IL_7O80_039 | No text annotation | ||
| IL_7O80_040 | Minor groove platform | ||
| IL_7O80_041 | No text annotation | ||
| IL_7O80_043 | No text annotation | ||
| IL_7O80_048 | Tandem non-canonical cWW pairs | ||
| IL_7O80_055 | No text annotation | ||
| IL_7O80_060 | Stack and bulge | ||
| IL_7O80_062 | Intercalated cWW | ||
| IL_7O80_064 | Isolated non-canonical cWW pair | ||
| IL_7O80_065 | Tandem non-canonical cWW pairs | ||
| IL_7O80_071 | Isolated non-canonical cWW pair | ||
| IL_7O80_073 | Minor groove platform with extra cWW | ||
| IL_7O80_074 | Isolated non-canonical cWW pair | ||
| IL_7O80_075 | No text annotation | ||
| IL_7O80_077 | Other IL | ||
| IL_7O80_078 | Isolated non-canonical cWW pair | ||
| IL_7O80_098 | Single bulged C | ||
| IL_7O80_099 | Single stack bend | ||
| IL_7O80_319 | No text annotation | ||
| IL_7O80_100 | Isolated non-canonical cWW pair | ||
| IL_7O80_359 | Single stack bend | ||
| IL_7O80_321 | No text annotation | ||
| IL_7O80_111 | Single stack bend | ||
| IL_7O80_112 | No text annotation | ||
| IL_7O80_118 | Isolated non-canonical cWW pair | ||
| IL_7O80_133 | Major groove intercalation | ||
| IL_7O80_134 | Multiple bulged bases | ||
| IL_7O80_323 | Isolated non-canonical cWW pair | ||
| IL_7O80_141 | No text annotation | ||
| IL_7O80_142 | No text annotation | ||
| IL_7O80_144 | No text annotation | ||
| IL_7O80_148 | Single bulged U | ||
| IL_7O80_324 | No text annotation | ||
| IL_7O80_150 | Isolated non-canonical cWW pair | ||
| IL_7O80_159 | No text annotation | ||
| IL_7O80_170 | No text annotation | ||
| IL_7O80_171 | No text annotation | ||
| IL_7O80_332 | No text annotation | ||
| IL_7O80_172 | No text annotation | ||
| IL_7O80_173 | No text annotation | ||
| IL_7O80_174 | Isolated cWH basepair | ||
| IL_7O80_176 | Tandem non-canonical cWW pairs | ||
| IL_7O80_335 | No text annotation | ||
| IL_7O80_192 | No text annotation | ||
| IL_7O80_204 | No text annotation | ||
| IL_7O80_205 | No text annotation | ||
| IL_7O80_206 | Major groove platform with extra pair | ||
| IL_7O80_211 | Isolated non-canonical cWW pair | ||
| IL_7O80_212 | Not an internal loop | ||
| IL_7O80_215 | Stack and bulge | ||
| IL_7O80_218 | No text annotation | ||
| IL_7O80_221 | No text annotation | ||
| IL_7O80_222 | Not an internal loop | ||
| IL_7O80_223 | Not an internal loop | ||
| IL_7O80_225 | No text annotation | ||
| IL_7O80_226 | Stack and bulge | ||
| IL_7O80_228 | Isolated non-canonical cWW pair | ||
| IL_7O80_232 | Isolated non-canonical cWW pair | ||
| IL_7O80_234 | Isolated non-canonical cWW pair | ||
| IL_7O80_235 | Single stack bend | ||
| IL_7O80_345 | No text annotation | ||
| IL_7O80_236 | No text annotation | ||
| IL_7O80_237 | No text annotation | ||
| IL_7O80_241 | Single bulged C | ||
| IL_7O80_346 | No text annotation | ||
| IL_7O80_244 | Decoding loop related | ||
| IL_7O80_245 | No text annotation | ||
| IL_7O80_247 | No text annotation | ||
| IL_7O80_249 | Not an internal loop | ||
| IL_7O80_252 | No text annotation | ||
| IL_7O80_256 | Not an internal loop | ||
| IL_7O80_257 | Isolated non-canonical cWW pair | ||
| IL_7O80_259 | No text annotation | ||
| IL_7O80_261 | Isolated non-canonical cWW pair | ||
| IL_7O80_262 | Not an internal loop | ||
| IL_7O80_266 | No text annotation | ||
| IL_7O80_267 | Triple sheared related | ||
| IL_7O80_271 | Multiple bulged bases | ||
| IL_7O80_278 | Single bulged C | ||
| IL_7O80_283 | Stack and bulge | ||
| IL_7O80_288 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7O80_032 | 1/A2/40:41, 1/A2/482:488, 1/A2/513:515 | No text annotation | homologous J3_8P9A_068 J3_58657.1 | |
| J3_7O80_033 | 1/A2/223:239, 1/A2/280:289, 1/A2/296:299 | No text annotation | ||
| J3_7O80_002 | 1/A2/683:686, 1/A2/918:923, 1/A2/1023:1024 | No text annotation | ||
| J3_7O80_034 | 1/A2/683:686, 1/A2/918:924, 1/A2/1020:1024 | No text annotation | ||
| J3_7O80_003 | 1/A2/817:820, 1/A2/830:832, 1/A2/844:849 | No text annotation | homologous J3_4V88_032 NA | |
| J3_7O80_035 | 1/A2/939:942, 1/A2/986:994, 1/A2/1001:1005 | No text annotation | homologous J3_8P9A_074 J3_23895.1 | |
| J3_7O80_005 | 1/A2/1095:1097, 1/A2/1137:1141, 1/A2/1148:1152 | No text annotation | ||
| J3_7O80_006 | 1/A2/1219:1222, 1/A2/1646:1652, 1/A2/1674:1681 | No text annotation | homologous J3_4V88_035 NA | |
| J3_7O80_007 | 1/A2/1226:1229, 1/A2/1531:1533, 1/A2/1639:1642 | No text annotation | homologous J3_4V88_036 NA | |
| J3_7O80_036 | 1/A2/1238:1245, 1/A2/1256:1267, 1/A2/1517:1521 | No text annotation | homologous J3_8P9A_078 J3_88451.1 | |
| J3_7O80_009 | 1/A2/1273:1278, 1/A2/1321:1325, 1/A2/1505:1511 | No text annotation | homologous J3_4V88_038 NA | |
| J3_7O80_010 | 1/A2/1341:1346, 1/A2/1385:1390, 1/A2/1482:1487 | No text annotation | homologous J3_8P9A_080 J3_17077.1 | |
| J3_7O80_011 | 1/A2/1351:1352, 1/A2/1361:1364, 1/A2/1376:1380 | No text annotation | homologous J3_8P9A_081 J3_76043.4 | |
| J3_7O80_037 | 1/A2/1392:1396, 1/A2/1451:1457, 1/A2/1471:1480 | No text annotation | ||
| J3_7O80_013 | 1/A2/1533:1537, 1/A2/1598:1605, 1/A2/1636:1639 | No text annotation | homologous J3_8C3A_044 NA | |
| J3_7O80_014 | 1/B5/112:116, 1/B5/155:160, 1/B5/275:278 | No text annotation | ||
| J3_7O80_038 | 1/B5/196:199, 1/B5/215:228, 1/B5/240:244 | No text annotation | ||
| J3_7O80_039 | 1/B5/351:367, 1/B5/374:379, 1/B8/21:24 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_7O80_015 | 1/B5/380:387, 1/B5/414:415, 1/B8/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_7O80_040 | 1/B5/380:390, 1/B5/401:415, 1/B8/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_7O80_041 | 1/B5/451:455, 1/B5/695:699, 1/B5/1236:1240 | No text annotation | ||
| J3_7O80_016 | 1/B5/1486:1492, 1/B5/1577:1579, 1/B5/1595:1598 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_7O80_017 | 1/B5/1501:1503, 1/B5/1535:1539, 1/B5/1564:1567 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_7O80_018 | 1/B5/1665:1666, 1/B5/1741:1745, 1/B5/1771:1776 | No text annotation | homologous J3_8P9A_051 J3_84137.1 | |
| J3_7O80_042 | 1/B5/1908:1910, 1/B5/1934:1940, 1/B5/1955:1957 | No text annotation | homologous J3_8C3A_005 NA | |
| J3_7O80_020 | 1/B5/2236:2242, 1/B5/2648:2650, 1/B5/2662:2665 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_7O80_021 | 1/B5/2245:2248, 1/B5/2628:2634, 1/B5/2643:2645 | No text annotation | homologous J3_5TBW_009 NA | |
| J3_7O80_022 | 1/B5/2283:2288, 1/B5/2358:2362, 1/B5/2379:2380 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_7O80_043 | 1/B5/2294:2299, 1/B5/2308:2319, 1/B5/2344:2351 | No text annotation | ||
| J3_7O80_023 | 1/B5/2394:2398, 1/B5/2415:2418, 1/B5/2600:2610 | No text annotation | ||
| J3_7O80_024 | 1/B5/2418:2419, 1/B5/2428:2432, 1/B5/2599:2600 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_7O80_044 | 1/B5/2441:2445, 1/B5/2580:2581, 1/B5/2585:2590 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_7O80_025 | 1/B5/3669:3671, 1/B5/3802:3806, 1/B5/3914:3919 | No text annotation | geometric J3_8VTW_006 NA | |
| J3_7O80_026 | 1/B5/3819:3822, 1/B5/3842:3857, 1/B5/3901:3904 | No text annotation | homologous J3_8P9A_060 J3_76247.1 | |
| J3_7O80_045 | 1/B5/3974:3976, 1/B5/4077:4088, 1/B5/4116:4121 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_7O80_027 | 1/B5/3987:3989, 1/B5/4013:4015, 1/B5/4024:4029 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_7O80_028 | 1/B5/4209:4212, 1/B5/4237:4239, 1/B5/4253:4259 | No text annotation | homologous J3_5TBW_014 NA | |
| J3_7O80_046 | 1/B5/4498:4501, 1/B5/4618:4622, 1/B5/4675:4687 | No text annotation | ||
| J3_7O80_047 | 1/B5/4709:4711, 1/B5/4725:4730, 1/B5/4799:4802 | No text annotation | ||
| J3_7O80_048 | 1/B7/9:14, 1/B7/65:66, 1/B7/109:110 | No text annotation | homologous J3_8P9A_066 J3_26985.1 | |
| J3_7O80_031 | 1/B8/44:45, 1/B8/58:64, 1/B8/95:99 | No text annotation | homologous J3_8C3A_060 NA | |
| J4_7O80_001 | 1/A2/98:106, 1/A2/356:358, 1/A2/406:410, 1/A2/432:433 | No text annotation | homologous J4_8P9A_021 J4_15241.2 | |
| J4_7O80_002 | 1/A2/672:674, 1/A2/1033:1038, 1/A2/1079:1090, 1/A2/1161:1162 | No text annotation | homologous J4_8P9A_022 J4_14595.1 | |
| J4_7O80_003 | 1/B5/111:112, 1/B5/278:283, 1/B5/304:310, 1/B5/327:330 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_7O80_004 | 1/B5/196:199, 1/B5/215:222, 1/B5/226:228, 1/B5/240:244 | No text annotation | ||
| J4_7O80_005 | 1/B5/706:707, 1/B5/855:861, 1/B5/871:878, 1/B5/1222:1228 | No text annotation | ||
| J4_7O80_006 | 1/B5/883:885, 1/B5/985:987, 1/B5/1126:1127, 1/B5/1212:1217 | No text annotation | ||
| J4_7O80_007 | 1/B5/2208:2214, 1/B5/2232:2234, 1/B5/2667:2672, 1/B5/3588:3589 | No text annotation | ||
| J4_7O80_008 | 1/B5/2249:2253, 1/B5/2277:2282, 1/B5/2381:2382, 1/B5/2620:2627 | No text annotation | ||
| J4_7O80_009 | 1/B5/2252:2253, 1/B5/2277:2282, 1/B5/2381:2382, 1/B5/2620:2626 | No text annotation | ||
| J4_7O80_010 | 1/B5/2294:2299, 1/B5/2308:2312, 1/B5/2314:2319, 1/B5/2344:2351 | No text annotation | ||
| J4_7O80_011 | 1/B5/2461:2462, 1/B5/2480:2485, 1/B5/2535:2541, 1/B5/2561:2562 | No text annotation | ||
| J4_7O80_012 | 1/B5/3366:3370, 1/B5/3382:3386, 1/B5/3422:3426, 1/B5/3553:3558 | No text annotation | homologous J4_8C3A_006 NA | |
| J4_7O80_013 | 1/B5/3428:3430, 1/B5/3484:3485, 1/B5/3503:3512, 1/B5/3546:3551 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_7O80_014 | 1/B5/3977:3981, 1/B5/4035:4037, 1/B5/4064:4065, 1/B5/4074:4076 | No text annotation | ||
| J4_7O80_015 | 1/B5/3977:3981, 1/B5/4035:4039, 1/B5/4063:4065, 1/B5/4074:4076 | No text annotation | homologous J4_8P9A_019 J4_59590.1 | |
| J4_7O80_016 | 1/B5/4333:4336, 1/B5/4366:4367, 1/B5/4422:4424, 1/B5/4458:4461 | No text annotation | ||
| J5_7O80_001 | 1/A2/30:34, 1/A2/522:528, 1/A2/559:564, 1/A2/593:596, 1/A2/642:645 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_7O80_002 | 1/A2/30:34, 1/A2/522:528, 1/A2/559:566, 1/A2/586:596, 1/A2/642:645 | No text annotation | ||
| J5_7O80_003 | 1/A2/53:56, 1/A2/89:96, 1/A2/435:437, 1/A2/458:460, 1/A2/471:475 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_7O80_004 | 1/A2/123:129, 1/A2/183:185, 1/A2/214:215, 1/A2/311:313, 1/A2/338:342 | No text annotation | ||
| J5_7O80_011 | 1/AT/7:10, 1/AT/25:26, 1/AT/44:46, 1/AT/55:59, 1/AT/75:76 | No text annotation | ||
| J5_7O80_006 | 1/B5/19:21, 1/B8/35:42, 1/B8/101:106, 1/B8/113:114, 1/B8/136:138 | No text annotation | homologous J5_8P9A_010 J5_27223.1 | |
| J5_7O80_007 | 1/B5/1279:1284, 1/B5/1471:1474, 1/B5/1613:1616, 1/B5/2131:2133, 1/B5/2188:2194 | No text annotation | homologous J5_8P9A_011 J5_08384.1 | |
| J5_7O80_008 | 1/B5/2698:2706, 1/B5/2730:2731, 1/B5/3345:3346, 1/B5/3350:3358, 1/B5/3567:3569 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_7O80_009 | 1/B5/3635:3642, 1/B5/4138:4146, 1/B5/4190:4199, 1/B5/4274:4280, 1/B5/4298:4303 | No text annotation | ||
| J5_7O80_010 | 1/B5/3652:3655, 1/B5/3934:3937, 1/B5/3950:3951, 1/B5/3973:3974, 1/B5/4121:4127 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
| J6_7O80_001 | 1/B5/21:26, 1/B5/57:67, 1/B5/74:78, 1/B5/105:109, 1/B5/332:339, 1/B8/33:35 | No text annotation | ||
| J6_7O80_002 | 1/B5/1296:1299, 1/B5/1328:1332, 1/B5/1339:1343, 1/B5/1373:1376, 1/B5/1419:1421, 1/B5/1454:1459 | No text annotation | ||
| J6_7O80_003 | 1/B5/3652:3655, 1/B5/3934:3937, 1/B5/3950:3951, 1/B5/3973:3976, 1/B5/4077:4088, 1/B5/4116:4127 | No text annotation | ||
| J7_7O80_001 | 1/B5/1621:1626, 1/B5/1639:1640, 1/B5/1791:1794, 1/B5/1818:1823, 1/B5/1834:1838, 1/B5/2016:2017, 1/B5/2121:2126 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7O80_001 | No text annotation | ||
| J3_7O80_004 | No text annotation | ||
| J3_7O80_008 | No text annotation | ||
| J3_7O80_012 | No text annotation | ||
| J3_7O80_019 | No text annotation | ||
| J3_7O80_029 | No text annotation | ||
| J3_7O80_030 | No text annotation | ||
| J5_7O80_005 | No text annotation |
Coloring options: