HL_7O80_016

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCGAG

Length

5 nucleotides

Bulged bases

7O80|1|A2|G|837, 7O80|1|A2|A|838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O80_016 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.3128

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

7O80|1|A2|C|835
7O80|1|A2|C|836
7O80|1|A2|G|837
7O80|1|A2|A|838
7O80|1|A2|G|839

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ai

Ribosomal protein S9 (Predicted)

Chain Ax

40S ribosomal protein S24