HL_7O80_032
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUCAUAAGC
- Length
- 9 nucleotides
- Bulged bases
- 7O80|1|A2|G|1666
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O80_032 not in the Motif Atlas
- Homologous match to HL_4V88_220
- Geometric discrepancy: 0.315
- The information below is about HL_4V88_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7O80|1|A2|G|1659
7O80|1|A2|U|1660
7O80|1|A2|C|1661
7O80|1|A2|A|1662
7O80|1|A2|U|1663
7O80|1|A2|A|1664
7O80|1|A2|A|1665
7O80|1|A2|G|1666
7O80|1|A2|C|1667
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AG
- uS14
- Chain Ap
- Ribosomal protein S16
- Chain As
- Ribosomal protein eS19
- Chain At
- 40S ribosomal protein uS10
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