HL_7O80_036
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- ACUUAAGAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O80_036 not in the Motif Atlas
- Homologous match to HL_4TUE_034
- Geometric discrepancy: 0.0875
- The information below is about HL_4TUE_034
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
7O80|1|AT|A|31
7O80|1|AT|C|32
7O80|1|AT|U|33
7O80|1|AT|U|34
7O80|1|AT|A|35
7O80|1|AT|A|36
7O80|1|AT|G|37
7O80|1|AT|A|38
7O80|1|AT|U|39
Current chains
- Chain AT
- P-site Leu-tRNA(Leu)
Nearby chains
- Chain A2
- Small subunit ribosomal RNA; SSU rRNA
- Chain AH
- Coronavirus frameshifting stimulation element
- Chain Ap
- Ribosomal protein S16
- Chain By
- Eukaryotic peptide chain release factor subunit 1
Coloring options: