HL_7O80_050

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCCGC

Length

6 nucleotides

Bulged bases

7O80|1|B5|C|775

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O80_050 not in the Motif Atlas

Geometric match to HL_2HW8_001

Geometric discrepancy: 0.1141

The information below is about HL_2HW8_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

7O80|1|B5|G|773
7O80|1|B5|U|774
7O80|1|B5|C|775
7O80|1|B5|C|776
7O80|1|B5|G|777
7O80|1|B5|C|778

Current chains

Chain B5

28S rRNA

Nearby chains