HL_7O80_058
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCUUCCAGUCCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O80_058 not in the Motif Atlas
- Geometric match to HL_4QLM_002
- Geometric discrepancy: 0.3578
- The information below is about HL_4QLM_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_00911.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
7O80|1|B5|C|1392
7O80|1|B5|C|1393
7O80|1|B5|U|1394
7O80|1|B5|U|1395
7O80|1|B5|C|1396
7O80|1|B5|C|1397
7O80|1|B5|A|1398
7O80|1|B5|G|1399
7O80|1|B5|U|1400
7O80|1|B5|C|1401
7O80|1|B5|C|1402
7O80|1|B5|G|1403
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BC
- 60S ribosomal protein L4
- Chain BE
- 60S ribosomal protein L6
- Chain BF
- Ribosomal Protein uL30
- Chain BQ
- Ribosomal protein L18
- Chain Bb
- 60S ribosomal protein L29
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