HL_7O80_077

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

7O80|1|B5|U|2373, 7O80|1|B5|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O80_077 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.1151

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7O80|1|B5|G|2366
7O80|1|B5|U|2367
7O80|1|B5|U|2368
7O80|1|B5|C|2369
7O80|1|B5|A|2370
7O80|1|B5|G|2371
7O80|1|B5|A|2372
7O80|1|B5|U|2373
7O80|1|B5|C|2374
7O80|1|B5|C|2375

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

60S ribosomal protein L19

Chain BX

uL23

Chain Bg

60S ribosomal protein L34