HL_7O80_096
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUG(OMG)GGCGG
- Length
- 9 nucleotides
- Bulged bases
- 7O80|1|B5|G|3941
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O80_096 not in the Motif Atlas
- Homologous match to HL_5TBW_054
- Geometric discrepancy: 0.13
- The information below is about HL_5TBW_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
7O80|1|B5|C|3939
7O80|1|B5|U|3940
7O80|1|B5|G|3941
7O80|1|B5|OMG|3942
7O80|1|B5|G|3943
7O80|1|B5|G|3944
7O80|1|B5|C|3945
7O80|1|B5|G|3946
7O80|1|B5|G|3947
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain AT
- Transfer RNA; tRNA
- Chain BI
- 60S ribosomal protein L10
- Chain Bb
- 60S ribosomal protein L29
Coloring options: