HL_7O80_111

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

7O80|1|B5|U|4715

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O80_111 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.1122

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

7O80|1|B5|G|4714
7O80|1|B5|U|4715
7O80|1|B5|A|4716
7O80|1|B5|G|4717
7O80|1|B5|A|4718
7O80|1|B5|C|4719
7O80|1|B5|G|4720
7O80|1|B5|A|4721
7O80|1|B5|C|4722

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BP

uL22