HL_7O80_124
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUUCUCUU(PSU)
- Length
- 9 nucleotides
- Bulged bases
- 7O80|1|B5|C|2470, 7O80|1|B5|U|2474
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O80_124 not in the Motif Atlas
- Homologous match to HL_8C3A_037
- Geometric discrepancy: 0.3457
- The information below is about HL_8C3A_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7O80|1|B5|G|2467
7O80|1|B5|U|2468
7O80|1|B5|U|2469
7O80|1|B5|C|2470
7O80|1|B5|U|2471
7O80|1|B5|C|2472
7O80|1|B5|U|2473
7O80|1|B5|U|2474
7O80|1|B5|PSU|2475
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BR
- 60S ribosomal protein L19
- Chain BU
- Ribosomal protein eL22
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