HL_7O81_007

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

7O81|1|A2|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O81_007 not in the Motif Atlas

Geometric match to HL_6UFM_001

Geometric discrepancy: 0.2682

The information below is about HL_6UFM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_04642.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

7O81|1|A2|G|378
7O81|1|A2|U|379
7O81|1|A2|C|380
7O81|1|A2|G|381
7O81|1|A2|C|382
7O81|1|A2|C|383
7O81|1|A2|G|384
7O81|1|A2|U|385
7O81|1|A2|G|386
7O81|1|A2|C|387
7O81|1|A2|C|388

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ah

40S ribosomal protein S8

Chain Ak

40S ribosomal protein S11