HL_7O81_008

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O81_008 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.1317

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7O81|1|A2|U|417
7O81|1|A2|C|418
7O81|1|A2|A|419
7O81|1|A2|G|420
7O81|1|A2|G|421
7O81|1|A2|G|422

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ab

Ribosomal protein uS5

Chain Ai

Ribosomal protein S9 (Predicted)

Chain Ak

40S ribosomal protein S11

Chain Av

Ribosomal protein S15a

Chain Aw

40S ribosomal protein S23