3D structure

PDB id
7O81 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CCGAG
Length
5 nucleotides
Bulged bases
7O81|1|A2|G|837
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7O81_016 not in the Motif Atlas
Geometric match to HL_4YAZ_004
Geometric discrepancy: 0.3412
The information below is about HL_4YAZ_004
Detailed Annotation
Mini UNCG
Broad Annotation
No text annotation
Motif group
HL_48778.2
Basepair signature
cWW-F
Number of instances in this motif group
46

Unit IDs

7O81|1|A2|C|835
7O81|1|A2|C|836
7O81|1|A2|G|837
7O81|1|A2|A|838
7O81|1|A2|G|839

Current chains

Chain A2
18S rRNA

Nearby chains

Chain Ad
Ribosomal protein eS4
Chain Ai
Ribosomal protein S9 (Predicted)
Chain Ax
40S ribosomal protein S24

Coloring options:


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