HL_7O81_020
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GA(PSU)CAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 7O81|1|A2|C|1058, 7O81|1|A2|U|1062
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O81_020 not in the Motif Atlas
- Homologous match to HL_4V88_208
- Geometric discrepancy: 0.2428
- The information below is about HL_4V88_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
7O81|1|A2|G|1055
7O81|1|A2|A|1056
7O81|1|A2|PSU|1057
7O81|1|A2|C|1058
7O81|1|A2|A|1059
7O81|1|A2|G|1060
7O81|1|A2|A|1061
7O81|1|A2|U|1062
7O81|1|A2|A|1063
7O81|1|A2|C|1064
7O81|1|A2|C|1065
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AE
- Ribosomal protein eS26
- Chain AH
- Coronavirus frameshifting stimulation element
- Chain AT
- Transfer RNA; tRNA
- Chain An
- 40S ribosomal protein uS11
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
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