HL_7O81_036
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUCUCAUAAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O81_036 not in the Motif Atlas
- Homologous match to HL_5IB8_208
- Geometric discrepancy: 0.2712
- The information below is about HL_5IB8_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36684.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
7O81|1|AJ|G|30
7O81|1|AJ|U|31
7O81|1|AJ|C|32
7O81|1|AJ|U|33
7O81|1|AJ|C|34
7O81|1|AJ|A|35
7O81|1|AJ|U|36
7O81|1|AJ|A|37
7O81|1|AJ|A|38
7O81|1|AJ|U|39
7O81|1|AJ|C|40
Current chains
- Chain AJ
- A-site Met-tRNA(Met)
Nearby chains
- Chain A2
- Small subunit ribosomal RNA; SSU rRNA
- Chain AC
- Ribosomal protein S27a
- Chain AD
- 40S ribosomal protein S30
- Chain AH
- Coronavirus frameshifting stimulation element
- Chain Ao
- 40S ribosomal protein uS19
- Chain Aw
- 40S ribosomal protein S23
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
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