HL_7O81_041
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 7O81|1|B5|A|39
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O81_041 not in the Motif Atlas
- Geometric match to HL_5TBW_001
- Geometric discrepancy: 0.0789
- The information below is about HL_5TBW_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36430.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
7O81|1|B5|U|37
7O81|1|B5|A|38
7O81|1|B5|A|39
7O81|1|B5|G|40
7O81|1|B5|C|41
7O81|1|B5|A|42
7O81|1|B5|U|43
7O81|1|B5|A|44
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BL
- Ribosomal protein eL13
- Chain BN
- Ribosomal protein L15
- Chain Ba
- 60S ribosomal protein L27a
- Chain Bo
- eL42
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