3D structure

PDB id
7O81 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GCGAAAGAC
Length
9 nucleotides
Bulged bases
7O81|1|B5|A|1585, 7O81|1|B5|G|1588
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7O81_065 not in the Motif Atlas
Homologous match to HL_5TBW_021
Geometric discrepancy: 0.112
The information below is about HL_5TBW_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_56443.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

7O81|1|B5|G|1582
7O81|1|B5|C|1583
7O81|1|B5|G|1584
7O81|1|B5|A|1585
7O81|1|B5|A|1586
7O81|1|B5|A|1587
7O81|1|B5|G|1588
7O81|1|B5|A|1589
7O81|1|B5|C|1590

Current chains

Chain B5
28S rRNA

Nearby chains

Chain BA
Ribosomal protein uL2
Chain BN
Ribosomal protein L15
Chain Bj
Ribosomal protein L37

Coloring options:


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