HL_7O81_066
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CC(PSU)CAG
- Length
- 6 nucleotides
- Bulged bases
- 7O81|1|B5|C|1631, 7O81|1|B5|C|1633, 7O81|1|B5|A|1634
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O81_066 not in the Motif Atlas
- Homologous match to HL_5TBW_022
- Geometric discrepancy: 0.2125
- The information below is about HL_5TBW_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7O81|1|B5|C|1630
7O81|1|B5|C|1631
7O81|1|B5|PSU|1632
7O81|1|B5|C|1633
7O81|1|B5|A|1634
7O81|1|B5|G|1635
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain Ba
- 60S ribosomal protein L27a
- Chain Bb
- 60S ribosomal protein L29
- Chain Bo
- eL42
Coloring options: