3D structure

PDB id
7O81 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CC(PSU)CAG
Length
6 nucleotides
Bulged bases
7O81|1|B5|C|1631, 7O81|1|B5|C|1633, 7O81|1|B5|A|1634
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7O81_066 not in the Motif Atlas
Homologous match to HL_5TBW_022
Geometric discrepancy: 0.2125
The information below is about HL_5TBW_022
Detailed Annotation
Externally structured
Broad Annotation
Externally structured
Motif group
HL_96426.1
Basepair signature
cWW-F
Number of instances in this motif group
4

Unit IDs

7O81|1|B5|C|1630
7O81|1|B5|C|1631
7O81|1|B5|PSU|1632
7O81|1|B5|C|1633
7O81|1|B5|A|1634
7O81|1|B5|G|1635

Current chains

Chain B5
28S rRNA

Nearby chains

Chain Ba
60S ribosomal protein L27a
Chain Bb
60S ribosomal protein L29
Chain Bo
eL42

Coloring options:


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