HL_7O81_070
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAUGAAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O81_070 not in the Motif Atlas
- Homologous match to HL_5TBW_026
- Geometric discrepancy: 0.1241
- The information below is about HL_5TBW_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_44398.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
7O81|1|B5|G|1825
7O81|1|B5|G|1826
7O81|1|B5|A|1827
7O81|1|B5|U|1828
7O81|1|B5|G|1829
7O81|1|B5|A|1830
7O81|1|B5|A|1831
7O81|1|B5|C|1832
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B7
- 5S ribosomal RNA; 5S rRNA
- Chain BF
- Ribosomal Protein uL30
- Chain Be
- eL32
- Chain Bf
- eL33
Coloring options: