HL_7O81_071

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

7O81|1|B5|A|1923

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O81_071 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.2532

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7O81|1|B5|C|1917
7O81|1|B5|A|1918
7O81|1|B5|U|1919
7O81|1|B5|G|1920
7O81|1|B5|G|1921
7O81|1|B5|A|1922
7O81|1|B5|A|1923
7O81|1|B5|G|1924
7O81|1|B5|U|1925
7O81|1|B5|C|1926
7O81|1|B5|G|1927

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bt

Ribosomal protein L12