HL_7O81_105
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- U(PSU)UGGGUUU(PSU)A
- Length
- 11 nucleotides
- Bulged bases
- 7O81|1|B5|U|4100
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7O81_105 not in the Motif Atlas
- Homologous match to HL_5TBW_060
- Geometric discrepancy: 0.4714
- The information below is about HL_5TBW_060
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
7O81|1|B5|U|4098
7O81|1|B5|PSU|4099
7O81|1|B5|U|4100
7O81|1|B5|G|4101
7O81|1|B5|G|4102
7O81|1|B5|G|4103
7O81|1|B5|U|4104
7O81|1|B5|U|4105
7O81|1|B5|U|4106
7O81|1|B5|PSU|4107
7O81|1|B5|A|4108
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BL
- Ribosomal protein eL13
- Chain Ba
- 60S ribosomal protein L27a
- Chain Bi
- 60S ribosomal protein L36
- Chain Bo
- eL42
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