HL_7O81_120

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

7O81|1|B8|U|111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7O81_120 not in the Motif Atlas

Homologous match to HL_5TBW_075

Geometric discrepancy: 0.2234

The information below is about HL_5TBW_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

7O81|1|B8|C|107
7O81|1|B8|A|108
7O81|1|B8|C|109
7O81|1|B8|U|110
7O81|1|B8|U|111
7O81|1|B8|G|112

Current chains

Chain B8

5.8S rRNA

Nearby chains

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain BX

uL23

Chain Bj

Ribosomal protein L37

Chain Bl

eL39