HL_7OBR_009

3D structure

PDB id

7OBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP early complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

7OBR|1|5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OBR_009 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.2927

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7OBR|1|5|U|204
7OBR|1|5|C|205
7OBR|1|5|U|206
7OBR|1|5|G|207
7OBR|1|5|A|208
7OBR|1|5|U|209
7OBR|1|5|C|210
7OBR|1|5|G|211

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Y

Ribosomal protein L26