RNA 3D Hub //

7OBR Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7OBR_0011/1/10:17GNRA wlth tandem sheared
geometric
HL_1E8O_001
HL_81538.2
HL_7OBR_0021/1/31:40No text annotation
geometric
HL_1E8O_002
HL_73255.1
HL_7OBR_0031/1/146:151GNRA variation
homologous
HL_1MFQ_001
HL_37824.8
HL_7OBR_0041/1/197:202GNRA
homologous
HL_1MFQ_002
HL_37824.8
HL_7OBR_0051/5/37:44No text annotation
geometric
HL_4WF9_006
HL_30068.2
HL_7OBR_0061/5/68:73No text annotation
homologous
HL_8C3A_002
NA
HL_7OBR_0071/5/89:95No text annotation
homologous
HL_8C3A_003
NA
HL_7OBR_0081/5/131:137No text annotation
geometric
HL_2ZNI_001
HL_75660.5
HL_7OBR_0091/5/204:211T-loop with 2 stacked bulged bases
homologous
HL_5TBW_005
NA
HL_7OBR_0101/5/222:226No text annotation
homologous
HL_5TBW_006
NA
HL_7OBR_0111/5/230:238T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_7OBR_0121/5/289:298No text annotation
homologous
HL_8C3A_008
NA
HL_7OBR_0131/5/314:323Pseudoknot geometry
homologous
HL_8C3A_009
NA
HL_7OBR_0141/5/368:373GNRA
homologous
HL_8C3A_010
NA
HL_7OBR_0151/5/393:398GNRA
homologous
HL_8C3A_011
NA
HL_7OBR_0161/5/500:654No text annotation
HL_7OBR_0851/5/989:1064No text annotation
HL_7OBR_0181/5/1178:1183GNRA
geometric
HL_6UFH_005
HL_37824.8
HL_7OBR_0191/5/1317:1326T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_7OBR_0201/5/1364:1373Externally structured
geometric
HL_8C3A_022
NA
HL_7OBR_0211/5/1389:1394GNRA
homologous
HL_8C3A_016
NA
HL_7OBR_0221/5/1406:1411Mini UNCG
geometric
HL_4OOG_001
HL_56334.1
HL_7OBR_0231/5/1436:1448No text annotation
geometric
HL_8C3A_039
NA
HL_7OBR_0241/5/1479:1486No text annotation
geometric
HL_8H9D_001
NA
HL_7OBR_0251/5/1561:1566GNRA
homologous
HL_8C3A_019
NA
HL_7OBR_0261/5/1593:1602No text annotation
homologous
HL_8C3A_020
NA
HL_7OBR_0271/5/1627:1635No text annotation
homologous
HL_8C3A_021
NA
HL_7OBR_0281/5/1675:1680Externally structured
homologous
HL_8C3A_022
NA
HL_7OBR_0291/5/1763:1769GNRA
homologous
HL_5TBW_023
NA
HL_7OBR_0301/5/1814:1823No text annotation
HL_7OBR_0311/5/1864:1870GNRA
homologous
HL_8C3A_025
NA
HL_7OBR_0321/5/1886:1893No text annotation
homologous
HL_5TBW_026
NA
HL_7OBR_0331/5/1957:2026No text annotation
HL_7OBR_0341/5/2087:2270No text annotation
HL_7OBR_0351/5/2317:2322GNRA
homologous
HL_8C3A_030
NA
HL_7OBR_0361/5/2376:2384T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_7OBR_0371/5/2420:2426Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_7OBR_0381/5/2458:2463GNRA variation
homologous
HL_8C3A_033
NA
HL_7OBR_0391/5/2487:2491Externally structured
geometric
HL_8C3A_022
NA
HL_7OBR_0401/5/2523:2532No text annotation
homologous
HL_8C3A_035
NA
HL_7OBR_0411/5/2561:2566GNRA
geometric
HL_4LFB_010
HL_37824.8
HL_7OBR_0421/5/2578:2583GNRA
homologous
HL_8C3A_036
NA
HL_7OBR_0431/5/2623:2632No text annotation
HL_7OBR_0441/5/2664:2670No text annotation
homologous
HL_8C3A_038
NA
HL_7OBR_0451/5/2705:2710No text annotation
geometric
HL_4WF9_003
HL_75660.5
HL_7OBR_0461/5/2738:2742No text annotation
homologous
HL_8C3A_040
NA
HL_7OBR_0471/5/2792:2799No text annotation
homologous
HL_5TBW_041
NA
HL_7OBR_0481/5/2810:2816GNRA
homologous
HL_5TBW_042
NA
HL_7OBR_0491/5/2872:2877No text annotation
geometric
HL_7RQB_042
NA
HL_7OBR_0831/5/2910:3584No text annotation
HL_7OBR_0501/5/3614:3618No text annotation
homologous
HL_8C3A_045
NA
HL_7OBR_0511/5/3639:3649No text annotation
homologous
HL_8C3A_046
NA
HL_7OBR_0521/5/3668:3674GNRA
homologous
HL_8C3A_047
NA
HL_7OBR_0531/5/3724:3729GNRA
homologous
HL_5TBW_048
NA
HL_7OBR_0541/5/3757:3767No text annotation
homologous
HL_8C3A_049
NA
HL_7OBR_0551/5/3796:3804No text annotation
homologous
HL_8C3A_050
NA
HL_7OBR_0561/5/3873:3882No text annotation
homologous
HL_8C3A_051
NA
HL_7OBR_0571/5/3948:4065No text annotation
geometric
HL_5AMQ_001
HL_48417.6
HL_7OBR_0581/5/4139:4145No text annotation
geometric
HL_4V88_197
NA
HL_7OBR_0591/5/4193:4201No text annotation
homologous
HL_8C3A_055
NA
HL_7OBR_0601/5/4210:4222No text annotation
homologous
HL_8C3A_056
NA
HL_7OBR_0611/5/4250:4258No text annotation
homologous
HL_8C3A_057
NA
HL_7OBR_0621/5/4270:4277Pseudoknot geometry
homologous
HL_8C3A_058
NA
HL_7OBR_0631/5/4301:4309No text annotation
homologous
HL_8C3A_059
NA
HL_7OBR_0641/5/4321:4326GNRA
homologous
HL_8C3A_060
NA
HL_7OBR_0651/5/4352:4362No text annotation
geometric
HL_2ZZM_002
HL_13963.3
HL_7OBR_0661/5/4417:4425No text annotation
homologous
HL_8C3A_062
NA
HL_7OBR_0671/5/4474:4481No text annotation
homologous
HL_8C3A_063
NA
HL_7OBR_0681/5/4497:4503No text annotation
geometric
HL_5TBW_063
NA
HL_7OBR_0691/5/4540:4545GNRA
homologous
HL_8C3A_065
NA
HL_7OBR_0701/5/4603:4608GNRA
geometric
HL_4V9F_066
HL_37824.8
HL_7OBR_0711/5/4646:4651Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_7OBR_0721/5/4688:4702No text annotation
homologous
HL_8C3A_068
NA
HL_7OBR_0731/5/4907:4914No text annotation
geometric
HL_4WF9_003
HL_75660.5
HL_7OBR_0741/5/4975:4983No text annotation
homologous
HL_8C3A_071
NA
HL_7OBR_0751/5/5021:5028No text annotation
geometric
HL_8C3A_039
NA
HL_7OBR_0841/7/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_7OBR_0761/7/36:41No text annotation
geometric
HL_5TBW_185
NA
HL_7OBR_0771/7/86:91GNRA
homologous
HL_5TBW_186
NA
HL_7OBR_0781/8/55:62No text annotation
geometric
HL_4P5J_004
HL_86769.4
HL_7OBR_0791/8/68:90No text annotation
homologous
HL_8C3A_075
NA
HL_7OBR_0801/8/107:112No text annotation
homologous
HL_5TBW_075
NA
HL_7OBR_0811/8/121:129No text annotation

Problematic loops

#loop idProblemSequence
HL_7OBR_017No text annotation
HL_7OBR_082No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7OBR_0011/1/52:54,
1/1/292:294		Isolated non-canonical cWW pair
geometric
IL_6OL3_002
IL_87907.2
IL_7OBR_0021/1/55:57,
1/1/290:291		Single stack bend
geometric
IL_5J7L_032
IL_26793.1
IL_7OBR_0031/1/57:60,
1/1/287:290		No text annotation
IL_7OBR_1811/1/64:93,
1/1/258:283		No text annotation
IL_7OBR_2031/1/93:94,
1/1/256:258		Single stack bend
geometric
IL_7QR8_009
IL_90729.1
IL_7OBR_0051/1/96:106,
1/1/248:254		No text annotation
IL_7OBR_1831/1/96:109,
1/1/244:254		No text annotation
IL_7OBR_0061/1/106:109,
1/1/244:248		No text annotation
IL_7OBR_1841/1/110:111,
1/1/239:243		No text annotation
IL_7OBR_0081/1/112:114,
1/1/237:238		Single bulged G
geometric
IL_5TBW_037
NA
IL_7OBR_0091/1/117:120,
1/1/230:234		Tandem non-canonical cWW pairs
geometric
IL_4V88_429
NA
IL_7OBR_0101/1/120:122,
1/1/228:230		Isolated non-canonical cWW pair
homologous
IL_1MFQ_002
IL_28037.2
IL_7OBR_0111/1/132:135,
1/1/162:165		Tandem non-canonical cWW pairs
geometric
IL_1D4R_001
IL_85033.2
IL_7OBR_0121/1/138:141,
1/1/156:159		Tandem non-canonical cWW pairs
homologous
IL_1MFQ_004
IL_85033.2
IL_7OBR_0131/1/175:177,
1/1/220:221		Single bulged A
homologous
IL_1MFQ_005
IL_31462.7
IL_7OBR_0141/1/181:188,
1/1/212:216		No text annotation
IL_7OBR_0151/1/188:190,
1/1/210:212		Isolated non-canonical cWW pair
geometric
IL_5J7L_050
IL_28037.2
IL_7OBR_0161/1/190:195,
1/1/204:210		No text annotation
IL_7OBR_0171/5/6:7,
1/8/149:151		Single bulged C
geometric
IL_1DQF_001
IL_61258.15
IL_7OBR_1861/5/12:14,
1/8/143:144		Single bulged U
homologous
IL_8C3A_003
NA
IL_7OBR_0191/5/16:18,
1/8/139:141		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
IL_87907.2
IL_7OBR_0201/5/26:27,
1/5/55:57		No text annotation
homologous
IL_8C3A_004
NA
IL_7OBR_0211/5/30:37,
1/5/44:52		9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
IL_84694.2
IL_7OBR_0221/5/81:88,
1/5/96:102		No text annotation
homologous
IL_8C3A_006
NA
IL_7OBR_0231/5/118:121,
1/5/152:153		Major groove intercalation
geometric
IL_1NBS_009
IL_82107.5
IL_7OBR_1871/5/118:122,
1/5/147:153		No text annotation
IL_7OBR_0241/5/121:122,
1/5/147:152		No text annotation
geometric
IL_5TBW_007
NA
IL_7OBR_0251/5/125:126,
1/5/142:144		Single bulged C
geometric
IL_1S03_006
IL_61258.15
IL_7OBR_0261/5/164:167,
1/5/268:271		Tandem non-canonical cWW pairs
geometric
IL_6CZR_141
NA
IL_7OBR_0271/5/168:173,
1/5/263:267		No text annotation
IL_7OBR_0281/5/180:182,
1/5/255:256		Single stack bend
geometric
IL_5J7L_032
IL_26793.1
IL_7OBR_1881/5/182:189,
1/5/252:255		No text annotation
IL_7OBR_0291/5/184:189,
1/5/252:253		No text annotation
IL_7OBR_0301/5/195:196,
1/5/244:246		No text annotation
IL_7OBR_0311/5/199:201,
1/5/214:215		Single bulged U
homologous
IL_8C3A_013
NA
IL_7OBR_0321/5/339:342,
1/8/32:33		Minor groove platform, major groove intercalation
geometric
IL_1U9S_005
IL_95583.2
IL_7OBR_0331/5/348:350,
1/8/25:26		Single bulged A
homologous
IL_8C3A_014
NA
IL_7OBR_0341/5/387:390,
1/5/401:414		No text annotation
geometric
IL_5TBW_014
NA
IL_7OBR_0351/5/415:421,
1/8/13:19		Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_7OBR_0361/5/443:446,
1/5/1300:1304		No text annotation
geometric
IL_7MLW_007
IL_99358.1
IL_7OBR_0371/5/459:460,
1/5/695:697		No text annotation
IL_7OBR_1891/5/462:472,
1/5/682:693		No text annotation
IL_7OBR_0381/5/482:486,
1/5/670:672		No text annotation
IL_7OBR_0391/5/488:490,
1/5/664:668		Decoding loop related
geometric
IL_3C3Z_002
IL_31737.3
IL_7OBR_0401/5/490:493,
1/5/661:664		No text annotation
IL_7OBR_0411/5/495:496,
1/5/657:659		Single stack bend
geometric
IL_4LFB_041
IL_90729.1
IL_7OBR_0421/5/497:499,
1/5/655:656		Stack outside cWW
geometric
IL_1NTA_001
IL_66635.5
IL_7OBR_0431/5/708:709,
1/5/1287:1289		Single bulged G
geometric
IL_4LFB_036
IL_00225.14
IL_7OBR_0441/5/722:724,
1/5/942:946		No text annotation
IL_7OBR_0451/5/726:731,
1/5/938:940		No text annotation
IL_7OBR_0461/5/731:735,
1/5/928:938		No text annotation
IL_7OBR_0471/5/735:737,
1/5/927:928		Single stack bend
geometric
IL_7A0S_083
IL_26793.1
IL_7OBR_0481/5/740:742,
1/5/922:924		Isolated non-canonical cWW pair
geometric
IL_4YHW_001
IL_87907.2
IL_7OBR_0491/5/745:752,
1/5/911:919		No text annotation
IL_7OBR_0501/5/1073:1074,
1/5/1236:1239		Single stack bend
geometric
IL_4V9F_081
IL_26793.1
IL_7OBR_1901/5/1074:1076,
1/5/1235:1236		Single stack bend
geometric
IL_8C3A_012
NA
IL_7OBR_0521/5/1077:1079,
1/5/1221:1234		No text annotation
IL_7OBR_0531/5/1081:1082,
1/5/1217:1219		Minor groove platform
geometric
IL_5T83_003
IL_51454.3
IL_7OBR_0541/5/1082:1085,
1/5/1212:1217		No text annotation
IL_7OBR_0551/5/1086:1087,
1/5/1209:1211		Single bulged C
geometric
IL_3W3S_001
IL_61258.15
IL_7OBR_0561/5/1097:1098,
1/5/1197:1199		Single stack bend
geometric
IL_5J7L_249
IL_90729.1
IL_7OBR_0571/5/1173:1175,
1/5/1186:1188		Isolated near basepair
geometric
IL_3NJ7_003
IL_42997.3
IL_7OBR_0581/5/1357:1360,
1/5/1378:1382		No text annotation
IL_7OBR_0591/5/1360:1361,
1/5/1376:1378		No text annotation
IL_7OBR_0601/5/1425:1429,
1/5/1455:1460		Triple sheared related
geometric
IL_4V9F_018
IL_97631.1
IL_7OBR_0611/5/1431:1434,
1/5/1450:1453		Double sheared
geometric
IL_1SA9_002
IL_09705.15
IL_7OBR_0621/5/1467:1468,
1/5/1496:1498		Single bulged A
homologous
IL_8C3A_026
NA
IL_7OBR_0631/5/1474:1476,
1/5/1489:1490		Single stack bend
geometric
IL_7A0S_005
IL_90729.1
IL_7OBR_0641/5/1520:1522,
1/5/1655:1657		Isolated non-canonical cWW pair
geometric
IL_5TBW_027
NA
IL_7OBR_0651/5/1522:1526,
1/5/1648:1655		No text annotation
homologous
IL_8C3A_030
NA
IL_7OBR_0661/5/1550:1551,
1/5/1576:1578		Single bulged G
homologous
IL_8C3A_032
NA
IL_7OBR_0671/5/1551:1555,
1/5/1572:1576		Triple sheared
homologous
IL_8C3A_033
NA
IL_7OBR_0681/5/1586:1589,
1/5/1605:1607		Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_7OBR_0691/5/1590:1592,
1/5/1603:1604		Single bulged U
homologous
IL_8C3A_035
NA
IL_7OBR_0701/5/1624:1626,
1/5/1636:1640		Multiple bulged bases
geometric
IL_5TBW_033
NA
IL_7OBR_0711/5/1671:1673,
1/5/1682:1684		Isolated non-canonical cWW pair
homologous
IL_8C3A_037
NA
IL_7OBR_0721/5/1686:1688,
1/5/1848:1851		No text annotation
IL_7OBR_0731/5/1694:1725,
1/5/1837:1842		No text annotation
IL_7OBR_0741/5/1732:1737,
1/5/1792:1797		5x5 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_7A0S_027
NA
IL_7OBR_0751/5/1737:1738,
1/5/1790:1792		Minor groove platform
geometric
IL_6DLR_003
IL_51454.3
IL_7OBR_0761/5/1739:1744,
1/5/1786:1789		C-loop with bulged stacked A's
homologous
IL_8C3A_043
NA
IL_7OBR_0771/5/1746:1749,
1/5/1781:1784		Tandem non-canonical cWW pairs
geometric
IL_5TBW_041
NA
IL_7OBR_0781/5/1749:1751,
1/5/1779:1781		Isolated non-canonical cWW pair
homologous
IL_8C3A_045
NA
IL_7OBR_1911/5/1753:1756,
1/5/1776:1777		Multiple bulged bases
geometric
IL_4YAZ_008
IL_82107.5
IL_7OBR_0801/5/1756:1758,
1/5/1774:1775		Single stack bend
geometric
IL_4LFB_041
IL_90729.1
IL_7OBR_0811/5/1759:1761,
1/5/1772:1773		Single stack bend
geometric
IL_4LFB_041
IL_90729.1
IL_7OBR_1921/5/1759:1763,
1/5/1769:1773		Partly complementary
geometric
IL_8D29_010
IL_49751.4
IL_7OBR_0821/5/1761:1763,
1/5/1769:1772		No text annotation
geometric
IL_4N0T_004
IL_99358.1
IL_7OBR_0831/5/1858:1860,
1/5/1874:1876		Isolated non-canonical cWW pair
homologous
IL_5TBW_046
NA
IL_7OBR_0841/5/1905:1909,
1/5/2067:2071		UAA/GAN
homologous
IL_8C3A_051
NA
IL_7OBR_0851/5/1911:1918,
1/5/2064:2065		SSU/LSU pseudoknot
homologous
IL_8C3A_052
NA
IL_7OBR_0861/5/1918:1920,
1/5/2063:2064		No text annotation
IL_7OBR_0871/5/1920:1922,
1/5/2062:2063		No text annotation
IL_7OBR_0881/5/1926:1933,
1/5/2053:2058		No text annotation
geometric
IL_5TBW_051
NA
IL_7OBR_0891/5/1933:1944,
1/5/2038:2053		No text annotation
geometric
IL_5TBW_052
NA
IL_7OBR_0901/5/1946:1948,
1/5/2035:2036		Single bulged U
homologous
IL_5TBW_053
NA
IL_7OBR_0911/5/2083:2085,
1/5/2272:2273		No text annotation
IL_7OBR_0921/5/2290:2292,
1/5/2342:2345		No text annotation
homologous
IL_8C3A_061
NA
IL_7OBR_0931/5/2299:2301,
1/5/2334:2335		Single bulged A
homologous
IL_8C3A_062
NA
IL_7OBR_0941/5/2302:2309,
1/5/2329:2333		Kink-turn
homologous
IL_8C3A_063
NA
IL_7OBR_0951/5/2312:2314,
1/5/2325:2326		Single bulged A
geometric
IL_7RQB_033
NA
IL_7OBR_0961/5/2358:2364,
1/5/3858:3863		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_061
NA
IL_7OBR_0971/5/2415:2419,
1/5/2427:2429		C-loop
geometric
IL_7A0S_047
IL_83150.2
IL_7OBR_0981/5/2446:2450,
1/5/2509:2514		UAA/GAN
homologous
IL_8C3A_067
NA
IL_7OBR_0991/5/2477:2479,
1/5/2499:2500		Not an internal loop
geometric
IL_4UYK_002
NA
IL_7OBR_1001/5/2542:2547,
1/5/2772:2774		Isolated non-canonical cWW pair
geometric
IL_4RUM_001
IL_57744.1
IL_7OBR_1011/5/2589:2593,
1/5/2752:2756		Triple sheared
homologous
IL_5TBW_067
NA
IL_7OBR_1021/5/2613:2614,
1/5/2724:2726		Single bulged C
homologous
IL_8C3A_075
NA
IL_7OBR_1031/5/2614:2615,
1/5/2722:2724		Single stack bend
homologous
IL_8C3A_076
NA
IL_7OBR_1041/5/2622:2623,
1/5/2632:2634		Single stack bend
geometric
IL_4V83_236
IL_90729.1
IL_7OBR_1051/5/2646:2648,
1/5/2685:2688		Decoding loop related
geometric
IL_2O3X_003
IL_31737.3
IL_7OBR_1061/5/2651:2653,
1/5/2681:2682		Single bulged G
geometric
IL_3NDB_004
IL_00225.14
IL_7OBR_1071/5/2656:2662,
1/5/2672:2678		Kink-turn
homologous
IL_5TBW_073
NA
IL_7OBR_1081/5/2704:2705,
1/5/2710:2712		No text annotation
IL_7OBR_1091/5/2832:2838,
1/5/3850:3853		No text annotation
homologous
IL_8C3A_080
NA
IL_7OBR_1101/5/2844:2846,
1/5/3842:3844		No text annotation
homologous
IL_8C3A_081
NA
IL_7OBR_1111/5/2847:2850,
1/5/3840:3841		Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA
IL_7OBR_1941/5/2847:2855,
1/5/3837:3841		No text annotation
homologous
IL_8C3A_484
NA
IL_7OBR_1121/5/2850:2855,
1/5/3837:3840		No text annotation
homologous
IL_8C3A_083
NA
IL_7OBR_1131/5/2867:2872,
1/5/2877:2883		No text annotation
homologous
IL_8C3A_084
NA
IL_7OBR_1141/5/2889:2891,
1/5/3610:3612		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_7OBR_1151/5/2896:2897,
1/5/3602:3605		No text annotation
homologous
IL_8C3A_086
NA
IL_7OBR_1951/5/2901:2905,
1/5/3590:3598		No text annotation
IL_7OBR_1961/5/2905:2906,
1/5/3588:3590		Single stack bend
geometric
IL_5J7L_269
IL_26793.1
IL_7OBR_1171/5/3632:3633,
1/5/3827:3829		Single bulged A
homologous
IL_5TBW_082
NA
IL_7OBR_1181/5/3660:3665,
1/5/3677:3684		No text annotation
homologous
IL_8C3A_088
NA
IL_7OBR_1191/5/3700:3703,
1/5/3749:3750		Major groove intercalation
homologous
IL_5TBW_084
NA
IL_7OBR_1201/5/3704:3705,
1/5/3745:3748		Major groove intercalation
homologous
IL_5TBW_085
NA
IL_7OBR_1211/5/3708:3710,
1/5/3741:3742		Single stack bend
homologous
IL_8C3A_091
NA
IL_7OBR_1971/5/3708:3714,
1/5/3739:3742		No text annotation
IL_7OBR_1221/5/3710:3714,
1/5/3739:3741		No text annotation
homologous
IL_8C3A_092
NA
IL_7OBR_1231/5/3715:3721,
1/5/3732:3738		No text annotation
homologous
IL_8C3A_093
NA
IL_7OBR_1241/5/3780:3781,
1/5/3811:3814		No text annotation
homologous
IL_8C3A_094
NA
IL_7OBR_1251/5/3781:3792,
1/5/3808:3811		No text annotation
geometric
IL_5TBW_090
NA
IL_7OBR_1261/5/3895:3898,
1/5/4563:4565		No text annotation
homologous
IL_8C3A_096
NA
IL_7OBR_1271/5/3900:3902,
1/5/4558:4561		No text annotation
homologous
IL_8C3A_097
NA
IL_7OBR_1281/5/3913:3915,
1/5/4388:4389		Single bulged U
homologous
IL_8C3A_098
NA
IL_7OBR_1291/5/3916:3917,
1/5/4384:4387		Minor groove platform
homologous
IL_5TBW_094
NA
IL_7OBR_1301/5/3927:3929,
1/5/4181:4184		No text annotation
homologous
IL_8C3A_100
NA
IL_7OBR_1311/5/4082:4088,
1/5/4161:4164		No text annotation
homologous
IL_5TBW_096
NA
IL_7OBR_1321/5/4095:4097,
1/5/4112:4113		Minor groove platform
geometric
IL_4V88_412
NA
IL_7OBR_1331/5/4191:4192,
1/5/4202:4204		Single bulged A
homologous
IL_8C3A_107
NA
IL_7OBR_1341/5/4243:4245,
1/5/4263:4267		No text annotation
homologous
IL_8C3A_108
NA
IL_7OBR_1351/5/4291:4293,
1/5/4317:4318		Single bulged A
geometric
IL_5WWT_001
IL_31462.7
IL_7OBR_1361/5/4295:4298,
1/5/4312:4315		Tandem non-canonical cWW pairs
homologous
IL_5TBW_100
NA
IL_7OBR_1371/5/4347:4350,
1/5/4364:4365		Single stack bend
geometric
IL_5J7L_032
IL_26793.1
IL_7OBR_1381/5/4400:4401,
1/5/4442:4444		Major groove platform
geometric
IL_5TBW_102
NA
IL_7OBR_1391/5/4401:4403,
1/5/4440:4442		Isolated non-canonical cWW pair
homologous
IL_5TBW_103
NA
IL_7OBR_1401/5/4403:4405,
1/5/4439:4440		Major groove platform
geometric
IL_5TBW_104
NA
IL_7OBR_1411/5/4405:4407,
1/5/4435:4439		Major groove minor groove platform with extra cWW
geometric
IL_5TBW_105
NA
IL_7OBR_1421/5/4412:4416,
1/5/4426:4430		Triple sheared
homologous
IL_5TBW_106
NA
IL_7OBR_1431/5/4453:4454,
1/5/4526:4528		Major groove platform
homologous
IL_8C3A_115
NA
IL_7OBR_1441/5/4456:4458,
1/5/4520:4524		No text annotation
homologous
IL_8C3A_116
NA
IL_7OBR_1451/5/4458:4459,
1/5/4517:4520		Multiple bulged bases
geometric
IL_5TBW_109
NA
IL_7OBR_1461/5/4466:4468,
1/5/4489:4491		Isolated non-canonical cWW pair
homologous
IL_8C3A_118
NA
IL_7OBR_1981/5/4466:4470,
1/5/4485:4491		No text annotation
IL_7OBR_1471/5/4468:4470,
1/5/4485:4489		No text annotation
IL_7OBR_1481/5/4495:4497,
1/5/4503:4505		Isolated non-canonical cWW pair
homologous
IL_8C3A_120
NA
IL_7OBR_1491/5/4537:4538,
1/5/4547:4549		Single bulged A
homologous
IL_5TBW_113
NA
IL_7OBR_1501/5/4580:4582,
1/5/4721:4723		No text annotation
geometric
IL_3ICQ_003
NA
IL_7OBR_1511/5/4582:4585,
1/5/4717:4721		Double sheared
homologous
IL_8C3A_123
NA
IL_7OBR_1521/5/4590:4592,
1/5/4618:4620		Isolated non-canonical cWW pair
homologous
IL_8C3A_124
NA
IL_7OBR_1531/5/4596:4603,
1/5/4608:4614		8x7 Sarcin-Ricin; G-bulge
homologous
IL_8C3A_125
NA
IL_7OBR_1541/5/4624:4629,
1/5/4669:4673		No text annotation
IL_7OBR_1551/5/4632:4637,
1/5/4662:4666		UAA/GAN related
homologous
IL_5TBW_118
NA
IL_7OBR_1561/5/4638:4640,
1/5/4659:4661		Isolated cWH basepair
geometric
IL_3R1C_012
IL_10167.6
IL_7OBR_1571/5/4641:4642,
1/5/4655:4658		Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_7OBR_1581/5/4681:4685,
1/5/4705:4709		UAA/GAN
homologous
IL_8C3A_129
NA
IL_7OBR_2041/5/4740:4742,
1/5/4958:4959		Single stack bend with SAM intercalation
geometric
IL_6FZ0_001
IL_90729.1
IL_7OBR_1601/5/4743:4746,
1/5/4954:4957		Tandem non-canonical cWW pairs
geometric
IL_5TBW_100
NA
IL_7OBR_2001/5/4755:4765,
1/5/4869:4878		No text annotation
IL_7OBR_1621/5/4768:4772,
1/5/4863:4866		No text annotation
geometric
IL_2O3V_003
IL_51479.1
IL_7OBR_1631/5/4885:4888,
1/5/4931:4934		Tandem non-canonical cWW pairs
geometric
IL_402D_001
IL_77658.1
IL_7OBR_1641/5/4891:4896,
1/5/4924:4928		No text annotation
IL_7OBR_1651/5/4899:4901,
1/5/4920:4921		No text annotation
IL_7OBR_1661/5/4972:4975,
1/5/4983:4986		Tandem non-canonical cWW pairs
homologous
IL_8C3A_135
NA
IL_7OBR_1671/5/4992:4994,
1/5/5057:5059		Isolated non-canonical cWW pair
geometric
IL_5TBW_127
NA
IL_7OBR_1681/5/4996:4997,
1/5/5053:5055		Single bulged C
geometric
IL_1KUQ_002
IL_61258.15
IL_7OBR_1691/5/5000:5002,
1/5/5045:5050		Isolated non-canonical cWW pair
homologous
IL_5TBW_132
NA
IL_7OBR_1701/5/5003:5009,
1/5/5039:5044		No text annotation
IL_7OBR_1711/5/5012:5014,
1/5/5035:5036		Single bulged U
homologous
IL_8C3A_140
NA
IL_7OBR_1721/5/5014:5017,
1/5/5032:5035		Double sheared; A in syn
geometric
IL_5TBW_135
NA
IL_7OBR_1731/7/15:16,
1/7/62:64		Single bulged A
homologous
IL_5TBW_372
NA
IL_7OBR_1741/7/21:27,
1/7/52:57		Minor groove platform related
homologous
IL_5TBW_373
NA
IL_7OBR_1751/7/28:29,
1/7/48:51		Major groove minor groove platform; mini C-loop
homologous
IL_7RQB_113
NA
IL_7OBR_1761/7/32:36,
1/7/41:45		Symmetric double minor groove platform
homologous
IL_7RQB_114
NA
IL_7OBR_1771/7/71:78,
1/7/98:104		8x7 Sarcin-Ricin; G-bulge
geometric
IL_7A0S_007
IL_04346.10
IL_7OBR_1781/7/79:81,
1/7/95:97		Isolated non-canonical cWW pair
geometric
IL_4V88_470
NA
IL_7OBR_1791/7/82:85,
1/7/92:94		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_7OBR_2021/8/44:64,
1/8/95:99		No text annotation
homologous
IL_8C3A_150
NA
IL_7OBR_1801/8/64:66,
1/8/92:95		Isolated non-canonical cWW pair
homologous
IL_5TBW_145
NA

Problematic loops

#loop idProblemSequence
IL_7OBR_182No text annotation
IL_7OBR_004No text annotation
IL_7OBR_007No text annotation
IL_7OBR_185Tandem non-canonical cWW pairs
IL_7OBR_018Isolated non-canonical cWW pair
IL_7OBR_051No text annotation
IL_7OBR_079Not an internal loop
IL_7OBR_193No text annotation
IL_7OBR_116No text annotation
IL_7OBR_159No text annotation
IL_7OBR_199No text annotation
IL_7OBR_161No text annotation
IL_7OBR_201Tandem non-canonical cWW pairs

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7OBR_0011/1/3:4,
1/1/23:28,
1/1/43:44		No text annotation
geometric
J3_1E8O_001
J3_11375.2
J3_7OBR_0021/1/128:129,
1/1/168:175,
1/1/221:222		No text annotation
homologous
J3_1MFQ_002
J3_70599.1
J3_7OBR_0031/5/112:116,
1/5/155:160,
1/5/275:278		No text annotation
J3_7OBR_0231/5/196:199,
1/5/215:228,
1/5/240:244		No text annotation
J3_7OBR_0241/5/351:367,
1/5/374:379,
1/8/21:24		No text annotation
homologous
J3_8P9A_045
J3_30040.2
J3_7OBR_0041/5/380:387,
1/5/414:415,
1/8/19:20		No text annotation
homologous
J3_5TBW_002
NA
J3_7OBR_0251/5/380:390,
1/5/401:415,
1/8/19:20		No text annotation
homologous
J3_8C3A_049
NA
J3_7OBR_0051/5/448:455,
1/5/701:704,
1/5/1293:1298		No text annotation
J3_7OBR_0061/5/711:713,
1/5/955:976,
1/5/1278:1285		No text annotation
J3_7OBR_0071/5/980:983,
1/5/1070:1073,
1/5/1239:1274		No text annotation
J3_7OBR_0081/5/1531:1537,
1/5/1622:1624,
1/5/1640:1643		No text annotation
homologous
J3_8C3A_003
NA
J3_7OBR_0091/5/1545:1548,
1/5/1580:1584,
1/5/1609:1614		No text annotation
homologous
J3_5TBW_005
NA
J3_7OBR_0101/5/1726:1727,
1/5/1802:1806,
1/5/1832:1836		No text annotation
J3_7OBR_0111/5/2393:2399,
1/5/2805:2807,
1/5/2819:2822		No text annotation
homologous
J3_5TBW_008
NA
J3_7OBR_0121/5/2402:2405,
1/5/2785:2791,
1/5/2800:2802		No text annotation
homologous
J3_8C3A_007
NA
J3_7OBR_0131/5/2440:2445,
1/5/2515:2519,
1/5/2536:2537		No text annotation
homologous
J3_5TBW_010
NA
J3_7OBR_0261/5/2451:2456,
1/5/2465:2476,
1/5/2501:2508		No text annotation
J3_7OBR_0141/5/2549:2555,
1/5/2572:2575,
1/5/2757:2770		No text annotation
J3_7OBR_0151/5/2575:2576,
1/5/2585:2589,
1/5/2756:2757		No text annotation
homologous
J3_8C3A_054
NA
J3_7OBR_0271/5/2598:2602,
1/5/2737:2738,
1/5/2742:2747		No text annotation
homologous
J3_8P9A_058
J3_12393.2
J3_7OBR_0161/5/3937:3939,
1/5/4074:4078,
1/5/4168:4173		Kink-turn 3-way junction
geometric
J3_5J7L_044
J3_89368.5
J3_7OBR_0171/5/4091:4094,
1/5/4114:4129,
1/5/4155:4158		No text annotation
homologous
J3_8C3A_009
NA
J3_7OBR_0281/5/4228:4230,
1/5/4331:4342,
1/5/4370:4375		No text annotation
homologous
J3_8C3A_056
NA
J3_7OBR_0181/5/4241:4243,
1/5/4267:4269,
1/5/4278:4283		No text annotation
homologous
J3_5TBW_013
NA
J3_7OBR_0191/5/4463:4466,
1/5/4491:4493,
1/5/4507:4513		No text annotation
homologous
J3_8C3A_011
NA
J3_7OBR_0291/5/4748:4754,
1/5/4879:4884,
1/5/4935:4952		No text annotation
J3_7OBR_0201/5/4970:4972,
1/5/4986:4991,
1/5/5060:5063		No text annotation
J3_7OBR_0211/7/9:14,
1/7/65:66,
1/7/109:110		No text annotation
homologous
J3_5TBW_045
NA
J3_7OBR_0221/8/44:55,
1/8/62:64,
1/8/95:99		No text annotation
geometric
J3_4WF9_001
J3_47707.1
J4_7OBR_0011/5/111:112,
1/5/278:283,
1/5/304:310,
1/5/327:330		No text annotation
J4_7OBR_0021/5/196:199,
1/5/215:222,
1/5/226:228,
1/5/240:244		No text annotation
J4_7OBR_0031/5/2365:2371,
1/5/2389:2391,
1/5/2824:2829,
1/5/3856:3857		No text annotation
J4_7OBR_0041/5/2406:2410,
1/5/2434:2439,
1/5/2538:2539,
1/5/2777:2784		No text annotation
homologous
J4_8C3A_004
NA
J4_7OBR_0051/5/2549:2555,
1/5/2572:2576,
1/5/2585:2589,
1/5/2756:2770		No text annotation
J4_7OBR_0061/5/2618:2619,
1/5/2637:2642,
1/5/2692:2698,
1/5/2718:2719		No text annotation
J4_7OBR_0071/5/3634:3638,
1/5/3650:3654,
1/5/3690:3694,
1/5/3821:3826		No text annotation
homologous
J4_8C3A_006
NA
J4_7OBR_0081/5/3696:3698,
1/5/3752:3754,
1/5/3770:3780,
1/5/3814:3819		No text annotation
J4_7OBR_0091/5/4231:4235,
1/5/4289:4291,
1/5/4318:4319,
1/5/4328:4330		No text annotation
J4_7OBR_0101/5/4231:4235,
1/5/4289:4293,
1/5/4317:4319,
1/5/4328:4330		No text annotation
homologous
J4_8C3A_008
NA
J4_7OBR_0111/5/4587:4590,
1/5/4620:4621,
1/5/4676:4678,
1/5/4712:4715		No text annotation
J5_7OBR_0011/5/19:21,
1/8/35:42,
1/8/101:106,
1/8/113:114,
1/8/136:138		No text annotation
homologous
J5_8P9A_010
J5_01737.2
J5_7OBR_0021/5/1335:1340,
1/5/1516:1519,
1/5/1658:1661,
1/5/2288:2290,
1/5/2345:2351		No text annotation
homologous
J5_8C3A_002
NA
J5_7OBR_0031/5/2855:2863,
1/5/2887:2888,
1/5/3613:3614,
1/5/3618:3626,
1/5/3835:3837		No text annotation
homologous
J5_8C3A_004
NA
J5_7OBR_0041/5/3903:3910,
1/5/4392:4400,
1/5/4444:4453,
1/5/4528:4534,
1/5/4552:4557		No text annotation
J5_7OBR_0051/5/3920:3923,
1/5/4188:4191,
1/5/4204:4205,
1/5/4227:4228,
1/5/4375:4381		No text annotation
homologous
J5_8P9A_015
J5_08912.1
J6_7OBR_0011/5/21:26,
1/5/57:67,
1/5/74:78,
1/5/105:109,
1/5/332:339,
1/8/33:35		No text annotation
J6_7OBR_0021/5/1352:1355,
1/5/1384:1388,
1/5/1395:1399,
1/5/1418:1421,
1/5/1464:1466,
1/5/1499:1504		No text annotation
J6_7OBR_0031/5/3920:3923,
1/5/4188:4191,
1/5/4204:4205,
1/5/4227:4230,
1/5/4331:4342,
1/5/4370:4381		No text annotation
J7_7OBR_0011/5/1666:1671,
1/5/1684:1685,
1/5/1852:1855,
1/5/1879:1884,
1/5/1895:1899,
1/5/2077:2078,
1/5/2278:2283		No text annotation

Problematic loops

No problematic loops


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