HL_7OBR_015

3D structure

PDB id

7OBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP early complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGAAGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OBR_015 not in the Motif Atlas

Homologous match to HL_8C3A_011

Geometric discrepancy: 0.0956

The information below is about HL_8C3A_011

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7OBR|1|5|U|393
7OBR|1|5|G|394
7OBR|1|5|A|395
7OBR|1|5|A|396
7OBR|1|5|G|397
7OBR|1|5|A|398

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

uL22

Chain s

Dipeptidyl aminopeptidase B

Chain x

Signal recognition particle 54 kDa protein