HL_7OBR_018

3D structure

PDB id

7OBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP early complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OBR_018 not in the Motif Atlas

Geometric match to HL_6UFH_005

Geometric discrepancy: 0.1869

The information below is about HL_6UFH_005

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7OBR|1|5|G|1178
7OBR|1|5|U|1179
7OBR|1|5|C|1180
7OBR|1|5|C|1181
7OBR|1|5|C|1182
7OBR|1|5|C|1183

Current chains

Chain 5

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L5