HL_7OBR_022

3D structure

PDB id

7OBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP early complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCGCUC

Length

6 nucleotides

Bulged bases

7OBR|1|5|G|1408, 7OBR|1|5|U|1410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OBR_022 not in the Motif Atlas

Geometric match to HL_4OOG_001

Geometric discrepancy: 0.2935

The information below is about HL_4OOG_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_56334.1

Basepair signature

cWW-F

Number of instances in this motif group

16

Unit IDs

7OBR|1|5|G|1406
7OBR|1|5|C|1407
7OBR|1|5|G|1408
7OBR|1|5|C|1409
7OBR|1|5|U|1410
7OBR|1|5|C|1411

Current chains

Chain 5

28S rRNA

Nearby chains

Chain b

60S ribosomal protein L29