HL_7OBR_037

3D structure

PDB id

7OBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP early complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

7OBR|1|5|G|2421, 7OBR|1|5|U|2425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OBR_037 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.2159

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

7OBR|1|5|A|2420
7OBR|1|5|G|2421
7OBR|1|5|C|2422
7OBR|1|5|A|2423
7OBR|1|5|G|2424
7OBR|1|5|U|2425
7OBR|1|5|U|2426

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

uL22

Chain R

60S RIBOSOMAL PROTEIN EL19

Chain s

Dipeptidyl aminopeptidase B