HL_7OBR_056

3D structure

PDB id

7OBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP early complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7OBR|1|5|A|3876, 7OBR|1|5|A|3877, 7OBR|1|5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OBR_056 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0769

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7OBR|1|5|G|3873
7OBR|1|5|G|3874
7OBR|1|5|G|3875
7OBR|1|5|A|3876
7OBR|1|5|A|3877
7OBR|1|5|C|3878
7OBR|1|5|G|3879
7OBR|1|5|G|3880
7OBR|1|5|G|3881
7OBR|1|5|C|3882

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain e

eL32