HL_7OBR_073

3D structure

PDB id

7OBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNC-SRP early complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAGAGGC

Length

8 nucleotides

Bulged bases

7OBR|1|5|A|4909, 7OBR|1|5|G|4910, 7OBR|1|5|A|4911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OBR_073 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1339

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

7OBR|1|5|G|4907
7OBR|1|5|G|4908
7OBR|1|5|A|4909
7OBR|1|5|G|4910
7OBR|1|5|A|4911
7OBR|1|5|G|4912
7OBR|1|5|G|4913
7OBR|1|5|C|4914

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain O

60S ribosomal protein L13a