HL_7ODE_023

3D structure

PDB id

7ODE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome LiCl core particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ODE_023 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1868

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7ODE|1|I|G|978
7ODE|1|I|A|979
7ODE|1|I|A|980
7ODE|1|I|A|981
7ODE|1|I|C|982
7ODE|1|I|A|983
7ODE|1|I|A|984
7ODE|1|I|C|985

Current chains

Chain I

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L20