HL_7ODE_028

3D structure

PDB id

7ODE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome LiCl core particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ODE_028 not in the Motif Atlas

Geometric match to HL_3NVI_002

Geometric discrepancy: 0.1002

The information below is about HL_3NVI_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7ODE|1|I|C|1363
7ODE|1|I|G|1364
7ODE|1|I|A|1365
7ODE|1|I|A|1366
7ODE|1|I|A|1367
7ODE|1|I|G|1368

Current chains

Chain I

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L34