HL_7ODS_031

3D structure

PDB id

7ODS (explore in PDB, NAKB, or RNA 3D Hub)

Description

State B of the human mitoribosomal large subunit assembly intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAGCCG

Length

8 nucleotides

Bulged bases

7ODS|1|A|G|3016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ODS_031 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.141

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

7ODS|1|A|U|3015
7ODS|1|A|G|3016
7ODS|1|A|C|3017
7ODS|1|A|A|3018
7ODS|1|A|G|3019
7ODS|1|A|C|3020
7ODS|1|A|C|3021
7ODS|1|A|G|3022

Current chains

Chain A

16S mitochondrial rRNA, DNA (30-MER),16S mitochondrial rRNA

Nearby chains

Chain 4

39S ribosomal protein L36, mitochondrial