HL_7ODS_032

3D structure

PDB id

7ODS (explore in PDB, NAKB, or RNA 3D Hub)

Description

State B of the human mitoribosomal large subunit assembly intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

U(OMU)GUUCA

Length

7 nucleotides

Bulged bases

7ODS|1|A|G|3040, 7ODS|1|A|U|3041, 7ODS|1|A|U|3042

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ODS_032 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.1937

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7ODS|1|A|U|3038
7ODS|1|A|OMU|3039
7ODS|1|A|G|3040
7ODS|1|A|U|3041
7ODS|1|A|U|3042
7ODS|1|A|C|3043
7ODS|1|A|A|3044

Current chains

Chain A

16S mitochondrial rRNA, DNA (30-MER),16S mitochondrial rRNA

Nearby chains

Chain z

rRNA methyltransferase 2, mitochondrial