HL_7ODS_041

3D structure

PDB id

7ODS (explore in PDB, NAKB, or RNA 3D Hub)

Description

State B of the human mitoribosomal large subunit assembly intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGCCUAAAAGCAGCC

Length

15 nucleotides

Bulged bases

7ODS|1|A|A|2181

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ODS_041 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3449

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

7ODS|1|A|G|2173
7ODS|1|A|G|2174
7ODS|1|A|C|2175
7ODS|1|A|C|2176
7ODS|1|A|U|2177
7ODS|1|A|A|2178
7ODS|1|A|A|2179
7ODS|1|A|A|2180
7ODS|1|A|A|2181
7ODS|1|A|G|2182
7ODS|1|A|C|2183
7ODS|1|A|A|2184
7ODS|1|A|G|2185
7ODS|1|A|C|2186
7ODS|1|A|C|2187

Current chains

Chain A

16S mitochondrial rRNA, DNA (30-MER),16S mitochondrial rRNA

Nearby chains

Chain J

39S ribosomal protein L11, mitochondrial

Chain N

39S ribosomal protein L16, mitochondrial