HL_7ODT_009

3D structure

PDB id

7ODT (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C of the human mitoribosomal large subunit assembly intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGACAAAC

Length

9 nucleotides

Bulged bases

7ODT|1|A|A|1991, 7ODT|1|A|A|1994

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ODT_009 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.2335

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7ODT|1|A|G|1988
7ODT|1|A|C|1989
7ODT|1|A|G|1990
7ODT|1|A|A|1991
7ODT|1|A|C|1992
7ODT|1|A|A|1993
7ODT|1|A|A|1994
7ODT|1|A|A|1995
7ODT|1|A|C|1996

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial

Chain d

39S ribosomal protein L45, mitochondrial