HL_7ODT_023

3D structure

PDB id

7ODT (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C of the human mitoribosomal large subunit assembly intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUAAAUAG

Length

9 nucleotides

Bulged bases

7ODT|1|A|U|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ODT_023 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.1994

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

7ODT|1|A|C|2612
7ODT|1|A|U|2613
7ODT|1|A|U|2614
7ODT|1|A|A|2615
7ODT|1|A|A|2616
7ODT|1|A|A|2617
7ODT|1|A|U|2618
7ODT|1|A|A|2619
7ODT|1|A|G|2620

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain L

39S ribosomal protein L14, mitochondrial

Chain t

Mitochondrial ribosome-associated GTPase 2