HL_7ODT_029

3D structure

PDB id

7ODT (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C of the human mitoribosomal large subunit assembly intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUAACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ODT_029 not in the Motif Atlas

Geometric match to HL_5J7L_197

Geometric discrepancy: 0.0899

The information below is about HL_5J7L_197

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7ODT|1|A|A|2902
7ODT|1|A|U|2903
7ODT|1|A|A|2904
7ODT|1|A|A|2905
7ODT|1|A|C|2906
7ODT|1|A|U|2907

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 1

39S ribosomal protein L33, mitochondrial

Chain 3

39S ribosomal protein L35, mitochondrial