HL_7ODT_030

3D structure

PDB id

7ODT (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C of the human mitoribosomal large subunit assembly intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGUCCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7ODT_030 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.1722

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7ODT|1|A|A|2958
7ODT|1|A|G|2959
7ODT|1|A|U|2960
7ODT|1|A|C|2961
7ODT|1|A|C|2962
7ODT|1|A|A|2963
7ODT|1|A|U|2964
7ODT|1|A|A|2965
7ODT|1|A|U|2966

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 4

39S ribosomal protein L36, mitochondrial

Chain t

Mitochondrial ribosome-associated GTPase 2