HL_7OE1_008

3D structure

PDB id

7OE1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit from E. coli

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OE1_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0882

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7OE1|1|A|A|320
7OE1|1|A|A|321
7OE1|1|A|C|322
7OE1|1|A|U|323
7OE1|1|A|G|324
7OE1|1|A|A|325
7OE1|1|A|G|326
7OE1|1|A|A|327
7OE1|1|A|C|328
7OE1|1|A|A|329
7OE1|1|A|C|330
7OE1|1|A|G|331
7OE1|1|A|G|332
7OE1|1|A|U|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20