7OE1 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7OE1_001 | 1/A/12:22 | No text annotation | homologous HL_4LFB_001 HL_31940.1 | |
| HL_7OE1_004 | 1/A/186:191 | GNRA | homologous HL_5J7L_004 NA | |
| HL_7OE1_006 | 1/A/259:267 | GNRA related | homologous HL_5J7L_006 NA | |
| HL_7OE1_007 | 1/A/296:301 | GNRA | homologous HL_4LFB_007 HL_34789.1 | |
| HL_7OE1_008 | 1/A/320:333 | No text annotation | homologous HL_4LFB_008 HL_39665.1 | |
| HL_7OE1_010 | 1/A/379:384 | GNRA | homologous HL_5J7L_010 NA | |
| HL_7OE1_011 | 1/A/419:424 | UNCG | homologous HL_5J7L_011 NA | |
| HL_7OE1_013 | 1/A/522:527 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_7OE1_014 | 1/A/617:623 | GNRA-like with tWH | homologous HL_4LFB_014 HL_92337.1 | |
| HL_7OE1_015 | 1/A/689:698 | No text annotation | homologous HL_6CZR_086 NA | |
| HL_7OE1_016 | 1/A/726:731 | GNRA | homologous HL_5J7L_016 NA | |
| HL_7OE1_017 | 1/A/786:796 | No text annotation | homologous HL_5J7L_017 NA | |
| HL_7OE1_019 | 1/A/862:867 | GNRA | homologous HL_4LFB_019 HL_34789.1 | |
| HL_7OE1_020 | 1/A/897:902 | GNRA | homologous HL_5J7L_020 NA | |
| HL_7OE1_024 | 1/A/1076:1081 | GNRA | homologous HL_5J7L_023 NA | |
| HL_7OE1_032 | 1/A/1515:1520 | GNRA | homologous HL_5J7L_031 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7OE1_002 | No text annotation | ||
| HL_7OE1_033 | No text annotation | ||
| HL_7OE1_003 | GNRA | ||
| HL_7OE1_005 | UNCG | ||
| HL_7OE1_009 | UNCG | ||
| HL_7OE1_012 | No text annotation | ||
| HL_7OE1_018 | No text annotation | ||
| HL_7OE1_021 | No text annotation | ||
| HL_7OE1_022 | GNRA | ||
| HL_7OE1_023 | Mini UNCG | ||
| HL_7OE1_025 | T-loop related | ||
| HL_7OE1_026 | No text annotation | ||
| HL_7OE1_027 | GNRA | ||
| HL_7OE1_028 | No text annotation | ||
| HL_7OE1_029 | T-loop with 3 stacked bulged bases | ||
| HL_7OE1_030 | No text annotation | ||
| HL_7OE1_031 | UNCG |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7OE1_001 | 1/A/30:32, 1/A/552:553 | Single bulged G | homologous IL_5J7L_001 NA | |
| IL_7OE1_002 | 1/A/44:45, 1/A/396:398 | Single bulged A | homologous IL_5J7L_002 NA | |
| IL_7OE1_003 | 1/A/47:52, 1/A/359:361 | No text annotation | geometric IL_5J7L_003 NA | |
| IL_7OE1_004 | 1/A/54:56, 1/A/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_34520.1 | |
| IL_7OE1_005 | 1/A/63:66, 1/A/103:104 | Multiple bulged bases | homologous IL_5J7L_005 NA | |
| IL_7OE1_006 | 1/A/67:69, 1/A/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 NA | |
| IL_7OE1_007 | 1/A/70:73, 1/A/97:98 | Minor groove platform | homologous IL_5J7L_007 NA | |
| IL_7OE1_009 | 1/A/128:131, 1/A/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 NA | |
| IL_7OE1_010 | 1/A/132:136, 1/A/227:230 | Minor groove platform related | homologous IL_5J7L_010 NA | |
| IL_7OE1_011 | 1/A/144:146, 1/A/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 NA | |
| IL_7OE1_012 | 1/A/147:153, 1/A/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 NA | |
| IL_7OE1_014 | 1/A/242:247, 1/A/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 NA | |
| IL_7OE1_068 | 1/A/242:248, 1/A/276:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 NA | |
| IL_7OE1_015 | 1/A/249:252, 1/A/274:275 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_7OE1_016 | 1/A/292:293, 1/A/304:308 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_7OE1_017 | 1/A/367:369, 1/A/392:393 | Single bulged U | geometric IL_5J7L_017 NA | |
| IL_7OE1_018 | 1/A/371:375, 1/A/389:390 | C-loop | homologous IL_5J7L_018 NA | |
| IL_7OE1_019 | 1/A/375:376, 1/A/387:389 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_7OE1_020 | 1/A/409:416, 1/A/427:433 | No text annotation | homologous IL_5J7L_020 NA | |
| IL_7OE1_021 | 1/A/440:442, 1/A/492:497 | No text annotation | homologous IL_5J7L_021 NA | |
| IL_7OE1_022 | 1/A/446:450, 1/A/483:488 | tSH-tHW-tWW | geometric IL_5J7L_022 NA | |
| IL_7OE1_023 | 1/A/450:453, 1/A/479:483 | No text annotation | ||
| IL_7OE1_024 | 1/A/453:455, 1/A/477:479 | Isolated non-canonical cWW pair | geometric IL_5UNE_003 NA | |
| IL_7OE1_025 | 1/A/504:511, 1/A/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 NA | |
| IL_7OE1_026 | 1/A/515:521, 1/A/528:536 | Kink-turn related | homologous IL_4LFB_021 IL_52042.1 | |
| IL_7OE1_027 | 1/A/569:575, 1/A/880:881 | No text annotation | homologous IL_5J7L_026 NA | |
| IL_7OE1_028 | 1/A/580:584, 1/A/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 NA | |
| IL_7OE1_029 | 1/A/594:596, 1/A/644:645 | Major groove platform | homologous IL_5J7L_028 NA | |
| IL_7OE1_030 | 1/A/597:598, 1/A/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 NA | |
| IL_7OE1_031 | 1/A/605:612, 1/A/628:633 | No text annotation | homologous IL_5J7L_030 NA | |
| IL_7OE1_032 | 1/A/654:655, 1/A/751:754 | Major groove platform; stack outside cWW | geometric IL_5J7L_031 NA | |
| IL_7OE1_033 | 1/A/658:659, 1/A/746:748 | Single stack bend | homologous IL_5J7L_032 NA | |
| IL_7OE1_069 | 1/A/659:660, 1/A/745:747 | Single stack bend | homologous IL_5J7L_032 NA | |
| IL_7OE1_034 | 1/A/662:666, 1/A/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_7OE1_035 | 1/A/673:678, 1/A/712:717 | No text annotation | geometric IL_4LFB_030 NA | |
| IL_7OE1_074 | 1/A/684:688, 1/A/699:706 | Kink-turn | homologous IL_5J7L_035 NA | |
| IL_7OE1_037 | 1/A/774:778, 1/A/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_7OE1_038 | 1/A/779:783, 1/A/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 NA | |
| IL_7OE1_039 | 1/A/887:894, 1/A/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
| IL_7OE1_040 | 1/A/922:928, 1/A/1389:1395 | No text annotation | ||
| IL_7OE1_076 | 1/A/1401:1404, 1/A/1497:1501 | No text annotation | geometric IL_8CRE_467 IL_25873.1 | |
| IL_7OE1_060 | 1/A/1412:1414, 1/A/1486:1488 | Isolated non-canonical cWW pair | homologous IL_4LFB_059 IL_01003.1 | |
| IL_7OE1_062 | 1/A/1430:1435, 1/A/1466:1470 | Triple sheared related | geometric IL_4V9F_018 IL_67427.1 | |
| IL_7OE1_064 | 1/A/1445:1448, 1/A/1455:1457 | No text annotation | homologous IL_5J7L_065 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7OE1_065 | No text annotation | ||
| IL_7OE1_066 | No text annotation | ||
| IL_7OE1_067 | No text annotation | ||
| IL_7OE1_008 | Tandem non-canonical cWW pairs | ||
| IL_7OE1_073 | Single bulged G | ||
| IL_7OE1_013 | Minor groove platform | ||
| IL_7OE1_036 | No text annotation | ||
| IL_7OE1_070 | No text annotation | ||
| IL_7OE1_041 | No text annotation | ||
| IL_7OE1_042 | No text annotation | ||
| IL_7OE1_043 | Minor groove platform | ||
| IL_7OE1_044 | Single stack bend | ||
| IL_7OE1_045 | Single bulged U | ||
| IL_7OE1_046 | Tandem non-canonical cWW pairs | ||
| IL_7OE1_071 | Isolated cWS basepair | ||
| IL_7OE1_075 | Minor groove platform | ||
| IL_7OE1_047 | No text annotation | ||
| IL_7OE1_048 | Single bulged A | ||
| IL_7OE1_049 | Isolated non-canonical cWW pair | ||
| IL_7OE1_050 | No text annotation | ||
| IL_7OE1_051 | Minor groove platform | ||
| IL_7OE1_052 | No text annotation | ||
| IL_7OE1_053 | No text annotation | ||
| IL_7OE1_054 | No text annotation | ||
| IL_7OE1_055 | Double sheared with non-canonical cWW | ||
| IL_7OE1_056 | No text annotation | ||
| IL_7OE1_057 | No text annotation | ||
| IL_7OE1_058 | Isolated non-canonical cWW pair | ||
| IL_7OE1_059 | No text annotation | ||
| IL_7OE1_072 | Tandem non-canonical cWW pairs | ||
| IL_7OE1_061 | Double sheared | ||
| IL_7OE1_063 | Single bulged A |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7OE1_001 | 1/A/46:47, 1/A/361:367, 1/A/393:395 | No text annotation | homologous J3_5J7L_001 NA | |
| J3_7OE1_013 | 1/A/46:52, 1/A/359:367, 1/A/393:395 | No text annotation | homologous J3_5J7L_050 NA | |
| J3_7OE1_002 | 1/A/586:588, 1/A/651:654, 1/A/754:755 | No text annotation | homologous J3_5J7L_002 NA | |
| J3_7OE1_014 | 1/A/586:588, 1/A/651:655, 1/A/751:755 | No text annotation | homologous J3_5J7L_051 NA | |
| J3_7OE1_003 | 1/A/672:673, 1/A/717:725, 1/A/732:734 | No text annotation | homologous J3_5J7L_003 NA | |
| J3_7OE1_015 | 1/A/672:677, 1/A/713:725, 1/A/732:734 | No text annotation | ||
| J3_7OE1_004 | 1/A/826:829, 1/A/857:861, 1/A/868:874 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_7OE1_020 | 1/A/1073:1074, 1/A/1083:1086, 1/A/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J4_7OE1_001 | 1/A/115:122, 1/A/239:240, 1/A/286:289, 1/A/311:312 | No text annotation | homologous J4_6CZR_027 NA | |
| J4_7OE1_002 | 1/A/142:144, 1/A/178:184, 1/A/193:198, 1/A/219:221 | No text annotation | homologous J4_5J7L_002 NA | |
| J4_7OE1_003 | 1/A/575:577, 1/A/764:769, 1/A/810:821, 1/A/879:880 | No text annotation | homologous J4_5J7L_003 NA | |
| J5_7OE1_001 | 1/A/36:39, 1/A/403:406, 1/A/436:440, 1/A/497:500, 1/A/545:548 | No text annotation | homologous J5_5J7L_001 NA | |
| J5_7OE1_002 | 1/A/36:39, 1/A/403:406, 1/A/436:442, 1/A/492:500, 1/A/545:548 | No text annotation | homologous J5_5J7L_002 NA | |
| J5_7OE1_003 | 1/A/58:61, 1/A/106:113, 1/A/314:316, 1/A/337:339, 1/A/350:354 | No text annotation | homologous J5_5J7L_003 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7OE1_005 | No text annotation | ||
| J3_7OE1_006 | No text annotation | ||
| J3_7OE1_007 | No text annotation | ||
| J3_7OE1_008 | No text annotation | ||
| J3_7OE1_016 | No text annotation | ||
| J3_7OE1_017 | No text annotation | ||
| J3_7OE1_009 | No text annotation | ||
| J3_7OE1_010 | No text annotation | ||
| J3_7OE1_011 | No text annotation | ||
| J3_7OE1_012 | No text annotation | ||
| J3_7OE1_018 | No text annotation | ||
| J3_7OE1_021 | No text annotation | ||
| J3_7OE1_019 | No text annotation |
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