HL_7OE1_026

3D structure

PDB id

7OE1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit from E. coli

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GGUCCGGCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OE1_026 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.3363

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7OE1|1|A|G|1133
7OE1|1|A|G|1134
7OE1|1|A|U|1135
7OE1|1|A|C|1136
7OE1|1|A|C|1137
7OE1|1|A|G|1138
7OE1|1|A|G|1139
7OE1|1|A|C|1140
7OE1|1|A|C|1141

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10