HL_7OF0_030

3D structure

PDB id

7OF0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AUAACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OF0_030 not in the Motif Atlas

Geometric match to HL_4NLF_001

Geometric discrepancy: 0.1219

The information below is about HL_4NLF_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

7OF0|1|A|A|2902
7OF0|1|A|U|2903
7OF0|1|A|A|2904
7OF0|1|A|A|2905
7OF0|1|A|C|2906
7OF0|1|A|U|2907

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 1

39S ribosomal protein L33, mitochondrial

Chain 3

39S ribosomal protein L35, mitochondrial

Chain q

Growth arrest and DNA damage-inducible proteins-interacting protein 1